New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292338 (0.810)29 (0.080) 16/98 NT 8.0% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 372 (1.020)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 485 total aligned reads displayed.

GAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499254‑2499387
                                                                   |                                                                  
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:5631633‑M2/1‑66 (MQ=255)
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:3921310‑M2/1‑66 (MQ=255)
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAc                                                                   <  1:4417863‑M2/67‑2 (MQ=255)
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAc                                                                   >  1:26087557‑M2/1‑66 (MQ=255)
   aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:975501‑M2/67‑3 (MQ=255)
   aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:7213239‑M2/67‑3 (MQ=255)
   aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:11324044‑M2/67‑3 (MQ=255)
    tAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgcc                                                                >  1:31850905‑M2/1‑64 (MQ=255)
        cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:31568607‑M2/1‑60 (MQ=255)
        cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:34804860‑M2/1‑60 (MQ=255)
           cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtca                                                          >  1:26894735‑M2/1‑57 (MQ=255)
               aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATc                                                      >  1:19237053/1‑67 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGa                                                         <  1:16009336/63‑1 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:10420598/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:2742606/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:22882253/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:21040864/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:17206402/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:15543121/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:12004642/1‑68 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:16727352‑M2/1‑51 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:18293267‑M2/1‑51 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:7399212/1‑68 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:481798/1‑68 (MQ=255)
                 cTGCTTCTGTAATGACCCCGCGCGCGGCATCGTCAACCTGCTGGCACCGCACGCCGGGGCGAATcgcg                                                   >  1:2130694/1‑68 (MQ=255)
                     ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:21648193/67‑1 (MQ=255)
                      tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:631089/1‑68 (MQ=255)
                      tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:28529031/1‑68 (MQ=255)
                      tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:34578869/1‑68 (MQ=255)
                      tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:22654269/1‑68 (MQ=255)
                      tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:32312987/1‑68 (MQ=255)
                       cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcagg                                             >  1:11686645‑M2/1‑45 (MQ=255)
                          tAATGACCCGGCGCGCGGCATCGTCACCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAta                                             >  1:3628838/1‑64 (MQ=255)
                          tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGCtt                                             >  1:31215326/1‑65 (MQ=255)
                           aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:32663452/1‑67 (MQ=255)
                           aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:12776151/1‑67 (MQ=255)
                           aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:28325548/1‑67 (MQ=255)
                           aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:33270033/1‑67 (MQ=255)
                             tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:6818216/1‑68 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:19135226/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:4218567/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:8968218/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:22390548/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:13309958/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:5476822/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:29553685/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg                                     <  1:22015911/67‑1 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGc                                    <  1:8483749/68‑1 (MQ=255)
                                 ccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCt                                   <  1:34031051/68‑1 (MQ=255)
                                  cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcaggttatggcgact                                  >  1:34361647‑M2/1‑34 (MQ=255)
                                  cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:30753097/68‑1 (MQ=255)
                                     cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:30227429/67‑1 (MQ=255)
                                     cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:15657366/1‑67 (MQ=255)
                                     cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:6580078/1‑67 (MQ=255)
                                     cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:7887210/1‑67 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:10889513/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:11225772/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:12553458/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:15269928/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:23570456/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:18540663/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:18443144/67‑1 (MQ=255)
                                           gCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAg                         >  1:26590121/1‑68 (MQ=255)
                                             aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:23052907/67‑1 (MQ=255)
                                             aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:8202523/67‑1 (MQ=255)
                                               cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:13746502/68‑1 (MQ=255)
                                               cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:14487077/68‑1 (MQ=255)
                                                gTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACaa                    >  1:19636386/1‑68 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:14768522/67‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:7673557/67‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:1416654/67‑1 (MQ=255)
                                                  cAACCTGCGGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:27140656/67‑1 (MQ=255)
                                                    aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:33689043/1‑68 (MQ=255)
                                                     ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:14998975/1‑68 (MQ=255)
                                                     ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:18912665/1‑68 (MQ=255)
                                                     ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCGGTGCCTGCAGGACAATTTGa               >  1:16936481/1‑68 (MQ=255)
                                                      ctgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGAt              >  1:2001261/1‑68 (MQ=255)
                                                      ctgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGAt              >  1:13061318/1‑68 (MQ=255)
                                                       tgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATa             >  1:7053063/1‑68 (MQ=255)
                                                       tgctgGCAGCGCACGCCGGGGCCAATAGCGGAGATTGCTGCGAGCTTTGCCTGCAGGACAATTTGATa             >  1:10047876/1‑68 (MQ=255)
                                                          tgGCTGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:9276914/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:24110007/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:16315125/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:17985009/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:13632127/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:23937187/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:12170975/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:25340458/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:25526010/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:26276971/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:29018800/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:31062305/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:12412474/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:33011468/68‑1 (MQ=255)
                                                             cAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        <  1:24647419/67‑1 (MQ=255)
                                                              aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGtt       <  1:21516237/67‑1 (MQ=255)
                                                                 gcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTaa     <  1:20534778/66‑1 (MQ=255)
                                                                 gcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTaa     <  1:17442731/66‑1 (MQ=255)
                                                                   aCGCCGGGGCGAATCGCTGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:27917530/67‑1 (MQ=255)
                                                                   aCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:9058721/67‑1 (MQ=255)
                                                                   |                                                                  
GAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499254‑2499387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.