| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2694210 = | 283 (0.680) | 11 (0.030) | 6/90 | NT | 5.5% | coding (148/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | CP009273 | 2694239 = | 151 (0.450) | coding (119/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 | |||||
Only 100 of 399 total aligned reads displayed.
GACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTG > CP009273/2694144‑2694275 | aCCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa > 1:10527561/1‑68 (MQ=255) aCCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa > 1:18366568/1‑68 (MQ=255) ccATTGCGGATCCCTGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa < 1:33616453/67‑1 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAg < 1:15106772/65‑1 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:12472611/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:25704658/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:29362204/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa < 1:20519442/67‑1 (MQ=255) ccATTGCGGATCCAGGTGACAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:32249811/1‑68 (MQ=255) cATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:6688715/1‑67 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc < 1:16001300‑M1/6‑1 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc < 1:27445078‑M1/6‑1 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc < 1:3995723‑M1/6‑1 (MQ=255) gCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGc > 1:31432082/1‑67 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAACCGCa < 1:30263404‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:29483382‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:23580578‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:20936911‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:33129455‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:64128‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:24678711‑M1/9‑1 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAACCGCTTCGCCAGAAAACGCAcc > 1:23715710/1‑68 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc > 1:11765348/1‑68 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc > 1:16613323/1‑68 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc > 1:26156380/1‑68 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc > 1:30769342/1‑68 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc > 1:10070655/1‑68 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCAcc > 1:5811139/1‑68 (MQ=255) ccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCAcc > 1:18103833‑M1/58‑68 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:6579357/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:26582699/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:22070141/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:30056835/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:6918163/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCg > 1:19384826/1‑66 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCg > 1:15371300/1‑66 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCg > 1:9578821/1‑66 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtg > 1:12931128/1‑68 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtg > 1:20070770/1‑68 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAAAGCACCGGCtg > 1:26372438/1‑68 (MQ=255) ggTGCCACACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggt < 1:25219635/68‑1 (MQ=255) gTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggtg > 1:15542266/1‑68 (MQ=255) gTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggtg > 1:19509545/1‑68 (MQ=255) tGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggtgg > 1:21575685/1‑68 (MQ=255) gCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACCCACCGGCTggtggt > 1:30467318/1‑68 (MQ=255) cAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGc < 1:14598706/68‑1 (MQ=255) cAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGc < 1:12675100/68‑1 (MQ=255) cAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGc < 1:10820037/68‑1 (MQ=255) gcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGTGCGt > 1:34830446‑M1/44‑68 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:19028819/68‑1 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:32671231/68‑1 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:31119695/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:1099142/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:18581857/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:31959368/68‑1 (MQ=255) ttttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTcc < 1:15723080/68‑1 (MQ=255) ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAg < 1:18809551/68‑1 (MQ=255) ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAg < 1:34388170/68‑1 (MQ=255) gctgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt > 1:24242229/1‑68 (MQ=255) tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:513428/1‑67 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:3329196/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:19791107/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:7429229/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:8520803/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:16282281/68‑1 (MQ=255) ggCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:28188391/66‑1 (MQ=255) ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:25770112/67‑1 (MQ=255) ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:5430917/67‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:9758117/68‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:29903842/68‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:16871250/68‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt > 1:1762451/1‑68 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:9292287/68‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt > 1:11189802/1‑68 (MQ=255) gcgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:699164‑M1/46‑1 (MQ=255) gcgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:22391904‑M1/46‑1 (MQ=255) gcgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:4900718‑M1/46‑1 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:27059347/1‑68 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:28798826/1‑68 (MQ=255) cgataacgaatgggctatctgGAAACCGCACCGGCTGGGGGTGCGTTTTCCCGATAGCAAATGCGTTa < 1:14264798‑M1/47‑1 (MQ=255) cacaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTAt < 1:21121169/68‑1 (MQ=255) cacaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTAt < 1:6093350/68‑1 (MQ=255) acaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATc > 1:34008381/1‑68 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCGTTCGTTATCGc < 1:20811055/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:22909595/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:337591/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:14112533/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:12073875/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:7382851/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCt < 1:8037930/66‑1 (MQ=255) aaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt < 1:13325094/68‑1 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:78344/1‑67 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:8983011/1‑67 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:13547027/1‑67 (MQ=255) gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTAACGCTTAATAc > 1:16443668/1‑67 (MQ=255) ttCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAcgc < 1:20277339/67‑1 (MQ=255) gCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACgcggcg > 1:1485097/1‑68 (MQ=255) gCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACgcggcg < 1:17362890/68‑1 (MQ=255) gCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACgcggcg < 1:21345581/68‑1 (MQ=255) cAGAAAACGCACCGGCTGGTGGTGCGTTTTGCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGt < 1:10862892/67‑1 (MQ=255) | GACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTG > CP009273/2694144‑2694275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |