| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2694210 = | 283 (0.680) | 11 (0.030) | 6/90 | NT | 5.5% | coding (148/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | CP009273 | 2694239 = | 151 (0.450) | coding (119/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 | |||||
Only 100 of 317 total aligned reads displayed.
TTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGC > CP009273/2694172‑2694306 | tttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCa < 1:3067584/68‑1 (MQ=255) ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAg < 1:18809551/68‑1 (MQ=255) gctgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt > 1:24242229/1‑68 (MQ=255) tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:10663928/1‑67 (MQ=255) tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:20496111/1‑67 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:7429229/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:21535377/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:8520803/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:19791107/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:14787517/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:15082777/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:1829892/68‑1 (MQ=255) ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:25770112/67‑1 (MQ=255) ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:19034096/67‑1 (MQ=255) ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCAt < 1:5430917/67‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:23889558/68‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:29903842/68‑1 (MQ=255) aagcgataacgaatgggctatctggaaaacgcaccaccagccggtgcgttttcCAGATAGCCCATTCg < 1:24372662‑M2/15‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt > 1:11189802/1‑68 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:9292287/68‑1 (MQ=255) gcgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt < 1:22391904‑M1/46‑1 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:657682/1‑68 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:28798826/1‑68 (MQ=255) cacaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTAt < 1:34737792/68‑1 (MQ=255) cacaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTAt < 1:6093350/68‑1 (MQ=255) acaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATc < 1:12743468/68‑1 (MQ=255) acaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATc > 1:3388711/1‑68 (MQ=255) taacgcatttgctatcgggaaaacgcacccccagccggtgcggtttcCAGATAGCCCATTCGTTATCg < 1:14264798‑M2/21‑1 (MQ=255) gCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCt > 1:13880357/1‑68 (MQ=255) cgaatgggctatctggaaaacgcaccaccagccggtgcgttttcCAGATAGCCCATTCGTTATCGCtt < 1:17513640‑M2/24‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCGAGATAGCCCATTCGTTATCGc < 1:3668568/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCGTTCGTTATCGc < 1:20811055/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:33013241/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:13416342/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:14112533/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:26706632/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:32357411/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:337591/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCtt < 1:5981917/67‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCtt < 1:12031200/67‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGGGGTGCGTTTTCCAGATAGCCCATTCGTTATCg < 1:30889472/64‑1 (MQ=255) aaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTaa < 1:25707199/68‑1 (MQ=255) aaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt < 1:2326697/68‑1 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:78344/1‑67 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:8983011/1‑67 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:31228014/1‑67 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:23073354/1‑67 (MQ=255) aCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAAt > 1:21165576/1‑67 (MQ=255) gggctatctgGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc < 1:32200069‑M1/58‑1 (MQ=255) gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc > 1:1596709/1‑67 (MQ=255) ttCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAcgcg < 1:10843682/68‑1 (MQ=255) ttCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAcgc < 1:20277339/67‑1 (MQ=255) gCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACgcggcg < 1:17362890/68‑1 (MQ=255) cacAAAAAGCCCCCGCGGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGt > 1:2209740‑M1/4‑67 (MQ=255) cAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTg < 1:15422295/68‑1 (MQ=255) aaaCGCACCGGCGGGGGGTGCGTTTTCCAGATCGCCCATTCTTTATCGCTTATTACGCGGCGTGc < 1:10994779/65‑1 (MQ=255) AAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGc > 1:1619640‑M1/1‑65 (MQ=255) tACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAgg > 1:1225938‑M1/2‑68 (MQ=255) ACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 1:9433276‑M1/68‑1 (MQ=255) ACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 1:4709303‑M1/68‑1 (MQ=255) ACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 1:1813561‑M1/68‑1 (MQ=255) ACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 1:21449260‑M1/68‑1 (MQ=255) ACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 1:6423883‑M1/68‑1 (MQ=255) CACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGa < 1:23479116‑M1/67‑1 (MQ=255) CACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGa < 1:24792229‑M1/67‑1 (MQ=255) CACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGa < 1:9540883‑M1/67‑1 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:7028036‑M1/1‑68 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:16952595‑M1/1‑68 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc < 1:33310872‑M1/68‑1 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:18510622‑M1/1‑68 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:29474820‑M1/1‑68 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:28316637‑M1/1‑68 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:10393221‑M1/1‑68 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:26306378‑M1/1‑68 (MQ=255) ACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:5641604‑M1/1‑68 (MQ=255) gCTGGTGGTGCGGTTTCCAGCTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCg > 1:7342799/1‑68 (MQ=255) cTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCg < 1:30078456/67‑1 (MQ=255) cTGGTGGGGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCg < 1:8285392/67‑1 (MQ=255) tggtggTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGa < 1:6611198/68‑1 (MQ=255) gtggtgCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATc > 1:15658036/1‑68 (MQ=255) ggtgcgttttcCAGATAGCCCATTCGTTATCGCTTAATAGGCGGCGTGCCAGGCGATCACCGGATCgg > 1:497812‑M2/12‑68 (MQ=255) ggtgcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCgg > 1:27870008‑M2/12‑68 (MQ=255) ggtgcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCg < 1:8024400‑M2/56‑1 (MQ=255) tgcgttttcCAGTTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg < 1:27294659‑M2/58‑1 (MQ=255) tgcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg < 1:33129455‑M2/58‑1 (MQ=255) tgcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg < 1:6986926‑M2/58‑1 (MQ=255) tgcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg < 1:15123167‑M2/58‑1 (MQ=255) tgcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg < 1:31843114‑M2/58‑1 (MQ=255) tgcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg < 1:20936911‑M2/58‑1 (MQ=255) tgcggtttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCggg < 1:30263404‑M2/58‑1 (MQ=255) gcgttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGc < 1:17893465‑M2/59‑1 (MQ=255) gttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGa < 1:9706431‑M2/61‑1 (MQ=255) gttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGa > 1:13168202‑M2/7‑67 (MQ=255) gttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGa < 1:3995723‑M2/61‑1 (MQ=255) gttttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGAt < 1:16357532‑M2/62‑1 (MQ=255) tttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCa < 1:6899709‑M2/64‑1 (MQ=255) tttcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCa < 1:34201393‑M2/64‑1 (MQ=255) tcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCAcc < 1:20016305‑M2/66‑1 (MQ=255) tcCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGAGCACCGGAGCGGGCGATCAcc < 1:16500362‑M2/66‑1 (MQ=255) cAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGc < 1:24997698/68‑1 (MQ=255) | TTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGC > CP009273/2694172‑2694306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |