| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 225 (0.540) | 28 (0.080) | 7/96 | NT | 9.7% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 327 (0.910) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 400 total aligned reads displayed.
TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 | ttAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTC > 1:34067574‑M1/1‑68 (MQ=255)ttAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTC > 1:18556790‑M1/1‑68 (MQ=255) aaTGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCG > 1:16537819‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGCGCCGGATGTCGGC > 1:29166466‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGGCGGATGTCGGC > 1:19979039‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:29906298‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:21660274‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:6521269‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:672151‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:2437434‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:11071758‑M1/1‑67 (MQ=255) gAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:5453356‑M1/1‑68 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:14217583‑M1/62‑67 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:30192768‑M1/62‑67 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:14940924‑M1/62‑67 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:3131998‑M1/62‑67 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgcgc > 1:13872943‑M1/61‑68 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgcgc > 1:1710862‑M1/61‑68 (MQ=255) ggtgtaagagagaagtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgcgc < 1:21082378‑M1/8‑1 (MQ=255) gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:16140489‑M1/1‑65 (MQ=255) gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:22927414‑M1/1‑65 (MQ=255) cGAAGCACGCGACAGTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:617049/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:11794026/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:17186302/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:3959036/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:14348671/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:19796217/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:29510842/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:1251399/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:32199523/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGGTGAGCCGGATGTCGGCGCGCtgt < 1:30538528/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGCTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:23330709/68‑1 (MQ=255) aGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgttgt < 1:3610143/68‑1 (MQ=255) aGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgttgt > 1:23959495/1‑68 (MQ=255) acacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg > 1:12990610/1‑68 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:6931863/68‑1 (MQ=255) ctctCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGaa > 1:9065955/1‑68 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat < 1:26108101/68‑1 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat > 1:33690639/1‑68 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat > 1:10256703/1‑68 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat > 1:1768323/1‑68 (MQ=255) aCGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataa > 1:22021233/1‑68 (MQ=255) aCGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataa > 1:588124/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATg > 1:27220627/1‑53 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:8261912/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:28327816/1‑68 (MQ=255) gCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:1056124/1‑67 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:27992214/1‑68 (MQ=255) ccTTACAAAACATGTTTGAAGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:4640554/1‑68 (MQ=255) cTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc < 1:21457592/67‑1 (MQ=255) cAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGtttt < 1:786536/68‑1 (MQ=255) cAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGtttt < 1:10688555/68‑1 (MQ=255) cAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGtttt < 1:22601363/68‑1 (MQ=255) aaaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttg > 1:28762008/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:22757164/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt < 1:981844/68‑1 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:27737628/1‑68 (MQ=255) aaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgtt < 1:22289157/68‑1 (MQ=255) aaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgtt < 1:26711884/68‑1 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:34557781/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:22380780/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:23128887/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:20852877/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:5205369/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:31507754/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCAGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:30081877/1‑68 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGATGAAAAATAATGCGTTTTGTtga < 1:20407983/68‑1 (MQ=255) cATGGTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:19631843/68‑1 (MQ=255) taactgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAata < 1:17980998‑M1/50‑1 (MQ=255) aactgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAata < 1:13401748‑M1/50‑1 (MQ=255) aactgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTGGTGTTGATGAata < 1:17441757‑M1/50‑1 (MQ=255) ctgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc < 1:25841794‑M1/52‑1 (MQ=255) ctgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc < 1:339642‑M1/52‑1 (MQ=255) ctgcatcacctgttcCGGCGCGCTGTGGTATGGCGTGGAAAAATAATGCGTTTTGTTGATGAATATc < 1:18306800‑M1/52‑1 (MQ=255) cGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc > 1:14773367/1‑67 (MQ=255) gTTGAGCCGGATGTCGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagc > 1:7597263‑M1/1‑22 (MQ=255) gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgc < 1:19272101‑M2/68‑3 (MQ=255) gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgc < 1:25378260‑M2/68‑3 (MQ=255) gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgc < 1:9269528‑M2/68‑3 (MQ=255) gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTAGATGAATATCgc < 1:31905211‑M2/68‑3 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:7445288‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:10024599‑M2/1‑63 (MQ=255) gCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:8451454‑M2/68‑8 (MQ=255) gCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:29684850‑M2/68‑8 (MQ=255) acctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCg < 1:26420214‑M1/60‑1 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc > 1:23684233‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc > 1:11377723‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCgg < 1:8717004/68‑1 (MQ=255) cGGATGTCGGCGCGCTGGTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccg > 1:30905154‑M2/1‑59 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:32416004/68‑1 (MQ=255) ctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:26546593‑M1/62‑1 (MQ=255) ctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:12189173‑M1/62‑1 (MQ=255) ctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:15695969‑M1/62‑1 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:20226713/1‑68 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:13577242/1‑68 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:12024956/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:16839668/68‑1 (MQ=255) cCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg < 1:25657035‑M1/67‑1 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:10820553‑M1/1‑68 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt < 1:4227095‑M1/68‑1 (MQ=255) | TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |