| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 225 (0.540) | 28 (0.080) | 7/96 | NT | 9.7% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 327 (0.910) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 487 total aligned reads displayed.
CGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > CP009273/2845458‑2845589 | cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:10167354‑M2/1‑1 (MQ=255)cctgttccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:25657035‑M2/1‑1 (MQ=255)cctggtccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgg < 1:18145905‑M2/1‑1 (MQ=255)cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCgg < 1:26349500/68‑1 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:10913090/68‑1 (MQ=255) ggATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:27228288/68‑1 (MQ=255) ctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGa < 1:12189173‑M1/62‑1 (MQ=255) tGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACa > 1:25017660/1‑68 (MQ=255) tccggcgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAg < 1:7643117‑M2/6‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:25421840/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:12024956/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:6866724/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGGTGATGAAGATCGCGCGCCGGAACAg > 1:31086132/1‑68 (MQ=255) cCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg < 1:23711565‑M1/67‑1 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt < 1:4227095‑M1/68‑1 (MQ=255) GGCGCGCTGTTGTATGTCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:30430604‑M1/1‑67 (MQ=255) GGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCTGACCAGGTg < 1:27677814‑M1/68‑1 (MQ=255) GGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTg < 1:21429225‑M1/68‑1 (MQ=255) GGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTg < 1:5225272‑M1/68‑1 (MQ=255) GGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTg < 1:11101028‑M1/68‑1 (MQ=255) CGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt < 1:7419375‑M1/68‑1 (MQ=255) CGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGc < 1:13604811‑M1/68‑1 (MQ=255) GCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGc > 1:14812108‑M1/1‑67 (MQ=255) GCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGc > 1:32463668‑M1/1‑67 (MQ=255) GCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGc > 1:34790634‑M1/1‑67 (MQ=255) tgttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAg < 1:24316825/67‑1 (MQ=255) tgttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAg < 1:21133833/67‑1 (MQ=255) tgttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAg < 1:10072682/67‑1 (MQ=255) gatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGCAg < 1:23312989‑M2/15‑1 (MQ=255) gttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGtt < 1:29320723/68‑1 (MQ=255) gttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGtt < 1:32329992/68‑1 (MQ=255) gttgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGtt > 1:33794383/1‑68 (MQ=255) tattcatcaacaccacgcattatttttcctcgccatacaacagcgcgccgGAACAGGTGATGCAGtt < 1:17441757‑M2/17‑1 (MQ=255) tgtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTa < 1:32727508/67‑1 (MQ=255) gtATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAAt < 1:26080256/68‑1 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:9518342/1‑54 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:28148718/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:19594087/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:8529285/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:18057658/1‑68 (MQ=255) aTGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTg > 1:18708745/1‑68 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:13040700/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:14594196/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:28666767/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:30348509/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:16281205/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:3918406/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:26652030/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:13424968/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:5912067/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:15109854/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:6305375/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:24120234/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:18962153/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:31460299/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:9143405/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:7000321/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:22019619/1‑67 (MQ=255) ggCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGa > 1:20652486/1‑67 (MQ=255) gAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCa > 1:12482079/1‑67 (MQ=255) gAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCa > 1:3325103/1‑67 (MQ=255) ggAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATc < 1:2036496/67‑1 (MQ=255) ataatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGa > 1:17572445/1‑68 (MQ=255) ataatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGa > 1:30178647/1‑68 (MQ=255) taatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGaa < 1:22337473/68‑1 (MQ=255) aatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAAc > 1:19864850/1‑68 (MQ=255) aatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAAc > 1:21764772/1‑68 (MQ=255) aatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAAc > 1:15879827/1‑68 (MQ=255) aatGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAAc > 1:8194412/1‑68 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:31925128/68‑1 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:29172838/68‑1 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:17771499/68‑1 (MQ=255) tGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGt < 1:11522393/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGc < 1:14065435/67‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:33403900/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:10526654/68‑1 (MQ=255) gTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCt < 1:16806201/68‑1 (MQ=255) tgttgATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTcac < 1:25290414/68‑1 (MQ=255) gttgATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTccca > 1:27886670/1‑68 (MQ=255) tgatgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtc < 1:34076481/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:24850631/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:18363710/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:33060581/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:22641626/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:22790323/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:19294606/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:4643543/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:26507302/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:5502496/68‑1 (MQ=255) tgaATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:17027024/68‑1 (MQ=255) tcaaTATCGCGCGGCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACAtctct < 1:23910503/66‑1 (MQ=255) aaTATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATctctct > 1:29973091/1‑68 (MQ=255) aaTATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATctctct > 1:15600222/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:23211099/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:14974629/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:13807948/1‑68 (MQ=255) atCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTac > 1:27426191/1‑68 (MQ=255) gcgcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTAcccc > 1:1599408‑M2/9‑68 (MQ=255) gcgccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccg > 1:14217583‑M2/7‑67 (MQ=255) gccgGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACAccgcc < 1:20109568‑M2/63‑1 (MQ=255) | CGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAACGTGCTTCACATCTCTCTTACACCGCCGA > CP009273/2845458‑2845589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |