| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3669630 | NA (NA) | 7 (0.020) | 6/82 | NT | NA | noncoding (150/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 3669631 | NA (NA) | noncoding (151/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
Only 100 of 472 total aligned reads displayed.
CACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCC > CP009273/3669563‑3669697 | aCGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa > 1:16267295/1‑68 (MQ=255) cgccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAg < 1:27113341‑M2/68‑2 (MQ=255) gccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAg < 1:12429246‑M2/67‑2 (MQ=255) ccgcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgac < 1:2794527‑M2/68‑4 (MQ=255) aTCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatc > 1:17263787‑M2/1‑61 (MQ=255) gCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaa < 1:6896522‑M2/68‑13 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaat < 1:7030466‑M2/68‑14 (MQ=255) aTGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatt < 1:23043577‑M2/68‑15 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:18746952‑M2/1‑53 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:19525574‑M2/1‑53 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:25363732‑M2/1‑53 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:14058172‑M2/1‑53 (MQ=255) aCAAAGCACCCTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:12312879/1‑68 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:14567833/1‑68 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:8527282/1‑68 (MQ=255) gCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:6400193/1‑68 (MQ=255) gCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:29193087/1‑68 (MQ=255) cacaCTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:18990983/1‑67 (MQ=255) cacaCTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:21269783/1‑67 (MQ=255) cacaCTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:30442838/1‑67 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:4974628/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:11925094/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct < 1:26287585/66‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATCATCATCActt < 1:25586613/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATAGCCGGATGTAAGACATCCGGCAAATATCATAActta > 1:16630450/1‑67 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:34592765/1‑68 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:11616563/1‑68 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct < 1:18248424/68‑1 (MQ=255) acTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:14783108/1‑67 (MQ=255) cTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACttcttc > 1:12862594/1‑68 (MQ=255) cTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACtacttc > 1:16528375/1‑68 (MQ=255) tttGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCa > 1:13719428/1‑68 (MQ=255) ccAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCt > 1:5221399/1‑67 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:3287835/68‑1 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:33039412/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:9857397/1‑68 (MQ=255) caaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGAc < 1:27630124/68‑1 (MQ=255) tCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACaaa < 1:26894699/68‑1 (MQ=255) tCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACaaa < 1:24539162/68‑1 (MQ=255) tAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAAt < 1:1002976/68‑1 (MQ=255) aaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg > 1:10331085/1‑68 (MQ=255) aaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg > 1:11139813/1‑68 (MQ=255) aaTCTGTTTAATTGCCGGAAGTCAgacatccggcaattaaacagatttagattgttggcaaagtgtgc > 1:20058521‑M2/1‑24 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:3228308/68‑1 (MQ=255) aTCTATTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:8715593/68‑1 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCGTCTGCGACAAAATCGt > 1:25047869/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:24003595/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:7488162/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:8072353/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:34269257/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:8287325/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:33422881/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:8332916/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:19307225/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:29625579/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:28113418/1‑67 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:4129255/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:22370155/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:31950527/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:16041132/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:22599682/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:20898287/67‑1 (MQ=255) tAATTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttca < 1:20460461‑M1/68‑54 (MQ=255) aaTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcat < 1:8258403‑M1/68‑55 (MQ=255) aaTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcat < 1:29523527‑M1/68‑55 (MQ=255) aaTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcat < 1:17926078‑M1/68‑55 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:2421463/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:24915483/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:25975134/68‑1 (MQ=255) atagCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:32151923/65‑1 (MQ=255) aTTGCCGTATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:27774329/68‑1 (MQ=255) aTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaatgtgtgctttgttcat > 1:9335522‑M1/1‑13 (MQ=255) aTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatg < 1:5593357‑M1/68‑56 (MQ=255) aTTGCCGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcat > 1:30218788‑M1/1‑13 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:10523663/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:21961923/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:28200467/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg > 1:7747839/1‑68 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:18923233/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:12220094/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:6078110/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:21526675/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:11330/68‑1 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt > 1:15492048/1‑68 (MQ=255) cGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccgga > 1:4564092‑M1/1‑8 (MQ=255) cGGATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccgga > 1:1353525‑M1/1‑8 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGaca > 1:31673326/1‑60 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTa > 1:31368655/1‑67 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg < 1:15822062/68‑1 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg < 1:12621666/68‑1 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg < 1:1516478/68‑1 (MQ=255) ggATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggat < 1:26139825‑M1/68‑62 (MQ=255) gATGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggat > 1:11002318‑M1/1‑6 (MQ=255) aTGTCtgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggatgc > 1:33863437‑M1/1‑5 (MQ=255) tGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCt > 1:17039968/1‑67 (MQ=255) gTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcc < 1:23565893/68‑1 (MQ=255) gTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcc < 1:10891425/68‑1 (MQ=255) gTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcc < 1:8883381/68‑1 (MQ=255) gTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTc > 1:17626730/1‑67 (MQ=255) ctgacatccggcaattaaacagatttagattgttggcaaagtgtgctttgttcatgccggatgcggcg < 1:3740484‑M1/68‑68 (MQ=255) | CACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCC > CP009273/3669563‑3669697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |