| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3669630 | NA (NA) | 7 (0.020) | 6/82 | NT | NA | noncoding (150/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 3669631 | NA (NA) | noncoding (151/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
Only 100 of 411 total aligned reads displayed.
ACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCC > CP009273/3669564‑3669697 | aCGCCGCATCCGGCATGAACAAAGCACACTTTGCCAGCAATCTAAATCTGTTTAATTGCCGGATGTCa > 1:13046430/1‑68 (MQ=255) gcATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacat > 1:33863437‑M2/1‑63 (MQ=255) aTCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatc > 1:17263787‑M2/1‑61 (MQ=255) cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggc > 1:75659‑M2/1‑58 (MQ=255) cGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggc > 1:28190431‑M2/1‑58 (MQ=255) gCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaa < 1:6896522‑M2/68‑13 (MQ=255) cATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaat < 1:7030466‑M2/68‑14 (MQ=255) aTGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatt < 1:23043577‑M2/68‑15 (MQ=255) aTGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatt > 1:31843521‑M2/1‑54 (MQ=255) aTGAACAAAGCACACATTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaat > 1:9335522‑M2/1‑54 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:19525574‑M2/1‑53 (MQ=255) tGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaatta > 1:8276676‑M2/1‑53 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca < 1:21039538/68‑1 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:11715667/1‑68 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca > 1:29534336/1‑68 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatca < 1:30656767/68‑1 (MQ=255) aCAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatc < 1:27660359/67‑1 (MQ=255) aaaGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatcatc < 1:30286783/68‑1 (MQ=255) aaaGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatcatc < 1:25531805/68‑1 (MQ=255) aaGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTAtcatca < 1:28555594/68‑1 (MQ=255) aGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTatcatc > 1:3257541/1‑66 (MQ=255) aGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAc < 1:23922860/68‑1 (MQ=255) gCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:14902892/1‑68 (MQ=255) gCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:8532034/1‑68 (MQ=255) cacaCTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:21269783/1‑67 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:16278207/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:2446590/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:10947482/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:20516699/67‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct > 1:10875887/1‑66 (MQ=255) acacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCAct < 1:8900211/66‑1 (MQ=255) acacTTTGCCAACAATCTAAATCTGATTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt < 1:27883808/67‑1 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:29478464/1‑68 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:34592765/1‑68 (MQ=255) cacTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActtct > 1:4161976/1‑68 (MQ=255) cTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACtacttc > 1:16528375/1‑68 (MQ=255) tttGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCa > 1:2722412/1‑68 (MQ=255) gCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaattaaacagatttagattgtt > 1:5825426‑M2/1‑36 (MQ=255) gCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaattaaacagatttagattgtt > 1:15258986‑M2/1‑36 (MQ=255) caacaaTCTAAATCTGTTTAATTGCCGGATGTCAgacatccggcaattaaacagatttagattgttgg > 1:14672317‑M2/1‑34 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:9857397/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:25711890/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg > 1:33039412/1‑68 (MQ=255) aacaaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCg < 1:10475339/68‑1 (MQ=255) caaTCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGAc > 1:6366435/1‑68 (MQ=255) tCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACaaa < 1:26894699/68‑1 (MQ=255) tAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAAt < 1:1002976/68‑1 (MQ=255) aaaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATc < 1:32891816/68‑1 (MQ=255) aaaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATc < 1:1662613/68‑1 (MQ=255) aaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg > 1:10331085/1‑68 (MQ=255) aaTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCg > 1:11139813/1‑68 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:11554868/68‑1 (MQ=255) aTCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt < 1:8322638/68‑1 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCGTCTGCGACAAAATCGt > 1:25047869/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:24943816/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:8444033/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:12208435/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:3861529/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:34269257/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:33422881/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:18104894/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:31419444/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:18747120/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:29886341/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:19307225/1‑67 (MQ=255) tCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGt > 1:20149798/1‑67 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAGTCGTCCGac > 1:32058992/1‑67 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGaca < 1:8743659/68‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:24196692/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:7754894/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:12600702/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:13597112/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:14233467/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:15546773/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:22599682/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac < 1:22370155/67‑1 (MQ=255) ttAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGac > 1:32196150/1‑67 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:25975134/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:5139930/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:4572566/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:15918508/68‑1 (MQ=255) aaTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt < 1:17691001/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:23550510/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:21961923/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:5266002/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:18923233/68‑1 (MQ=255) aTTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTg < 1:8116659/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:11330/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:28025704/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:21526675/68‑1 (MQ=255) ttGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGa < 1:12323688/68‑1 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt > 1:18291655/1‑68 (MQ=255) tGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAt > 1:26367381/1‑68 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTa > 1:19098978/1‑67 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg < 1:1612805/68‑1 (MQ=255) cGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg < 1:26171980/68‑1 (MQ=255) gATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAg > 1:13936390/1‑66 (MQ=255) tGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCt > 1:17039968/1‑67 (MQ=255) cAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTcccc < 1:2465388/68‑1 (MQ=255) cAGACATACGTCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACAGTGATTAGCCTcccc < 1:12730115/68‑1 (MQ=255) | ACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCC > CP009273/3669564‑3669697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |