| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3693271 | 256 (0.610) | 14 (0.040) | 7/94 | NT | 5.7% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small |
| ? | CP009273 | = 3693281 | 250 (0.710) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small | |||||
Only 100 of 551 total aligned reads displayed.
ACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC > CP009273/3693205‑3693338 | aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:33167480/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:16115094/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:34111633/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:15055201/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:23600844/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:24351991/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga < 1:12939592/68‑1 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:31059461/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:31324173/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:25228637/1‑68 (MQ=255)aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga > 1:26739813/1‑68 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCTCagag > 1:6492055/1‑68 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag > 1:26832735/1‑68 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag < 1:24212701/68‑1 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag < 1:32138035/68‑1 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag > 1:26033137/1‑68 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag > 1:20097305/1‑68 (MQ=255) ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag < 1:27269370/68‑1 (MQ=255) cGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGt > 1:7826370/1‑68 (MQ=255) aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGttt > 1:10092316/1‑67 (MQ=255) cGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTc > 1:29726999/1‑67 (MQ=255) cGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTc > 1:16314388/1‑67 (MQ=255) gTTCGCCTGAACGGCGGCGACTGGCTGCCTTACCAGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc > 1:34755618/1‑67 (MQ=255) tCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcccc < 1:32501105/67‑1 (MQ=255) cGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCc > 1:8244308‑M2/1‑67 (MQ=255) gCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct > 1:22243171‑M2/1‑66 (MQ=255) gCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct > 1:923258‑M2/1‑66 (MQ=255) ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct < 1:19511518‑M2/67‑3 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:31822308‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:20757637‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:28717732‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:10695532‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:5305418‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:10754766‑M2/1‑62 (MQ=255) gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg > 1:30136851‑M2/1‑62 (MQ=255) aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcc > 1:31409881‑M2/1‑60 (MQ=255) aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggc > 1:1152862‑M2/1‑60 (MQ=255) aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg < 1:727455‑M2/66‑7 (MQ=255) ggcggcGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTg > 1:33364971/1‑68 (MQ=255) ggcggcGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTg > 1:33479922/1‑68 (MQ=255) ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt > 1:29034223/1‑67 (MQ=255) gACTGGGTGCCTTACCCGCAGAAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCgg < 1:16713449/68‑1 (MQ=255) cTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGgc > 1:1931180/1‑68 (MQ=255) tGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttct > 1:13811603‑M2/1‑49 (MQ=255) gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCaa > 1:21811795/1‑68 (MQ=255) gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCa < 1:5570757/67‑1 (MQ=255) gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactg > 1:17143257‑M2/1‑44 (MQ=255) ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt > 1:16583677/1‑68 (MQ=255) ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt > 1:24827347/1‑68 (MQ=255) ccTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt > 1:17319921/1‑68 (MQ=255) ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt > 1:30817233/1‑68 (MQ=255) gCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAc < 1:3039433/68‑1 (MQ=255) gCAGTAAGAACGAAAAACGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAc < 1:9457494/68‑1 (MQ=255) aGTAAGAACGAAAAAGGCCGCAGgggggaaactatgcggcctttttagttcttactgcgggtaaggc > 1:11922021‑M1/1‑23 (MQ=255) aGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACg > 1:15899604/1‑67 (MQ=255) aGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGccg > 1:11134295/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:24989081/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:32937207/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:19048830/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:12623274/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg > 1:14550644/1‑65 (MQ=255) aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGCCGCAAATTGCCATTACGGCAg > 1:2835015/1‑65 (MQ=255) aCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc < 1:34518177/66‑1 (MQ=255) cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg > 1:18379989/1‑67 (MQ=255) cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg > 1:14186453/1‑67 (MQ=255) cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg > 1:6702421/1‑67 (MQ=255) cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg > 1:3729330/1‑67 (MQ=255) cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg > 1:2129554/1‑67 (MQ=255) accaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACg > 1:25416589/4‑67 (MQ=255) aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc > 1:25713676/1‑67 (MQ=255) aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc > 1:19829866/1‑67 (MQ=255) aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc > 1:12326729/1‑67 (MQ=255) aGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCg < 1:23422405/68‑1 (MQ=255) ggCCGCAGAGTTTCCCCCCTGCGGCCTGTTCCTGGCGCAAATTGCCAATACGGCAGCCTCACGCCCGc > 1:15558941/1‑68 (MQ=25) ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc > 1:18788480/1‑68 (MQ=255) gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa > 1:900411/1‑68 (MQ=255) gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa > 1:4869396/1‑68 (MQ=255) gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa > 1:17858999/1‑68 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:27532187‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:22737820‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:10891399‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:19734391‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:13051606‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc > 1:4596252‑M1/1‑6 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt < 1:26334503‑M1/66‑61 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt < 1:23045729‑M1/66‑61 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt < 1:29437596‑M1/66‑61 (MQ=255) ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt < 1:13612802‑M1/66‑61 (MQ=255) ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc < 1:28146092/66‑1 (MQ=255) ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc < 1:32751598/66‑1 (MQ=255) ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt > 1:4162802/1‑68 (MQ=255) ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt > 1:10300712/1‑68 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:15183965/67‑1 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac > 1:7107495/1‑67 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:5432848/67‑1 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:20397026/67‑1 (MQ=255) agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac < 1:3376240/67‑1 (MQ=255) ggggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcg > 1:6031596‑M1/1‑1 (MQ=255) ggggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcg > 1:840573‑M1/1‑1 (MQ=255) ggggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggcg > 1:8655649‑M1/1‑1 (MQ=255) | ACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC > CP009273/3693205‑3693338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |