| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3851553 = | 370 (0.890) | 29 (0.090) | 9/86 | NT | 10.9% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 191 (0.600) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
Only 100 of 835 total aligned reads displayed.
ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGA > CP009273/3851486‑3851620 | gatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc > 1:29922377‑M1/68‑68 (MQ=255)gatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc < 1:25504151‑M1/1‑1 (MQ=255)aTAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCC > 1:26733891‑M1/1‑68 (MQ=255) atagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc < 1:27373187‑M1/1‑1 (MQ=255) atagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc < 1:19015981‑M1/1‑1 (MQ=255) tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc < 1:32951553‑M1/3‑1 (MQ=255) tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc < 1:6620863‑M1/3‑1 (MQ=255) tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc < 1:24421198‑M1/3‑1 (MQ=255) tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc < 1:2767287‑M1/3‑1 (MQ=255) tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc < 1:12092308‑M1/3‑1 (MQ=255) agtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACg < 1:5424231‑M1/4‑1 (MQ=255) agtctggcggcggaaggtaatcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACg < 1:22887724‑M1/4‑1 (MQ=255) gtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg < 1:30204409‑M1/5‑1 (MQ=255) acgGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCCCGACGATGTTGGTCCACGG > 1:12942745‑M1/2‑68 (MQ=255) cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGG < 1:22152845‑M1/68‑1 (MQ=255) cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGG < 1:10814333‑M1/68‑1 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg > 1:23960596‑M1/62‑67 (MQ=255) ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg > 1:17816302‑M1/62‑66 (MQ=255) cATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCC < 1:5212303‑M1/67‑1 (MQ=255) gcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg < 1:5593031‑M1/10‑1 (MQ=255) aTCCTTAAAGTAGCGCCCGATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:21248783‑M1/68‑1 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:17201782‑M1/68‑1 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG > 1:4059405‑M1/1‑68 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG > 1:13811676‑M1/1‑68 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:31790581‑M1/68‑1 (MQ=255) aTCCTTAAAGTAGCGCCCCATAGGGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG < 1:14611108‑M1/68‑1 (MQ=255) cggcggaaggtattcgctttaattccggctacacctgttcaccggtttgtacgcctgCACGGGCCgg > 1:15656397‑M1/58‑67 (MQ=255) cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg > 1:6229861‑M1/58‑67 (MQ=255) cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg > 1:11786352‑M1/58‑67 (MQ=255) cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt > 1:15422966‑M1/55‑67 (MQ=255) cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt > 1:13194085‑M1/55‑67 (MQ=255) cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt > 1:29663064‑M1/55‑67 (MQ=255) tAAAGTAGCGCCCCATCGGGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:31166083/68‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:8302481/68‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg < 1:9383306/68‑1 (MQ=255) aaGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGtt > 1:34188314/1‑68 (MQ=255) aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:26977309/1‑68 (MQ=255) aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:17505500/1‑68 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:32598010/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:26253771/1‑67 (MQ=255) gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:22554882/1‑67 (MQ=255) gTAGCGCCCCAGAGTGGAGATGTTTTTGCCTGGCGCGACGGTGTTGGTCCACGGGCCGGACTGGttc > 1:10004998/1‑66 (MQ=255) gTAGCGCCACATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:25207021/1‑67 (MQ=255) tAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc > 1:860353/1‑68 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg < 1:11556310/66‑1 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg < 1:21070427/68‑1 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg > 1:31452622/1‑68 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg < 1:26534009/68‑1 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg < 1:7029045/68‑1 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg < 1:18675899/68‑1 (MQ=255) gcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAg > 1:3400088/1‑68 (MQ=255) gcCCCATAGTGGAGATGTATTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAg > 1:18263083/1‑68 (MQ=255) aTAGTGGAGATTTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc < 1:14293045/68‑1 (MQ=255) aTAGTGGAGATGTTTTTGCCTGTGGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc < 1:23674453/68‑1 (MQ=255) aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc < 1:214646/68‑1 (MQ=255) aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc < 1:1347917/68‑1 (MQ=255) aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg < 1:9141296/68‑1 (MQ=255) aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg < 1:25956687/68‑1 (MQ=255) aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg < 1:20138997/68‑1 (MQ=255) aGTGGAGATGATTTTGCCTGGCGCGACGTTGTTGGTGCACGGGCCTGACTGGTTAGCGTAGATACCgg < 1:23450315/68‑1 (MQ=255) gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt > 1:2229767/1‑68 (MQ=255) gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt > 1:19277969/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa > 1:28748484/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa > 1:3089673/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTAAGCGTAGATACCGGTaa > 1:16499931/1‑68 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGCGCCGGACTGGTTAGCGTAGATACCGGTaa > 1:9617382/1‑68 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag > 1:29091490‑M2/1‑65 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag < 1:7846631‑M2/67‑3 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag > 1:16794637‑M2/1‑65 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag > 1:34326052‑M2/1‑65 (MQ=255) ttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccg < 1:28285830‑M2/68‑7 (MQ=255) tttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccg < 1:10466370‑M2/67‑7 (MQ=255) cctgttcaccggtttgtacgcctgCACGGGCCGGCCGGGGTGGCGTAGATACCGGTAAATAGTCCgg < 1:4727260‑M1/43‑1 (MQ=255) cctgttcaccggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGCTACCGGTAAATAGTCCgg < 1:32344033‑M1/43‑1 (MQ=255) tGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcc > 1:5026573‑M2/1‑59 (MQ=255) tGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcc > 1:4315849‑M2/1‑59 (MQ=255) gCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggccc < 1:18423547‑M2/68‑11 (MQ=255) gCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggccc > 1:15823923‑M2/1‑58 (MQ=255) gCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccgcccc > 1:25007962‑M2/1‑58 (MQ=255) ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccg < 1:7278947‑M2/68‑12 (MQ=255) ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccg < 1:33318489‑M2/68‑12 (MQ=255) ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccg < 1:33779442‑M2/68‑12 (MQ=255) ccTGGCGCGACGTTGTTGGGCCACGGGCCGGACGGGTTAGCGTAGATACCGGTAAATagtccggccc > 1:21902575‑M2/1‑57 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt > 1:24803647‑M2/1‑56 (MQ=255) cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt > 1:7592727‑M2/1‑56 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTatttaccggtatctacgctaaccagtccggcccgtgcag > 1:1136599‑M1/1‑28 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:12524868/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:28391514/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 1:3357869/68‑1 (MQ=255) gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATA‑CGGTAAATAGTCCGGCCCGTGCAgg < 1:5809981/67‑1 (MQ=255) gACGTTGTTGGGCCACGGGCCGGACTGGGTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg < 1:1620845/68‑1 (MQ=255) cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt < 1:30493272/67‑1 (MQ=255) cgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGGAAATAGTCCGGCCCGTGCAGGCGTTCaaa < 1:34731090‑M1/61‑1 (MQ=255) tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 1:20571707/68‑1 (MQ=255) cctgCACGGGCCGGTCTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg < 1:23105123‑M1/64‑1 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:19727871/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:32091983/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:8925715/1‑68 (MQ=255) tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt > 1:3835212/1‑68 (MQ=255) CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa < 1:1509440‑M1/68‑1 (MQ=255) | ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGA > CP009273/3851486‑3851620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |