| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 275 (0.660) | 22 (0.060) | 10/94 | NT | 8.6% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 236 (0.670) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 420 total aligned reads displayed.
GCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCT > CP009273/4047431‑4047563 | gCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCaa > 1:26737847/1‑68 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:18007410/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:20437328/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:2316200/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:3517979/68‑1 (MQ=255) cAGCTGTCCGGTTGCATTTTCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATc < 1:16698478/68‑1 (MQ=255) cAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATc < 1:27625062/68‑1 (MQ=255) cAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATc < 1:3957187/68‑1 (MQ=255) cAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATCCAAACAGTTCGCCGGGCAAATc < 1:9218061/68‑1 (MQ=255) gCTGTCCGGTTGCATTTGTGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:6533822/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:29812132/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:11763815/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:13424618/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:5270308/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:22471581/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:16348035/1‑65 (MQ=255) tGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa > 1:6329667/1‑68 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:12562216/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:31032114/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:24790888/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:2277011/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:21959570/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:11047211/68‑1 (MQ=255) cGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa < 1:9536391/68‑1 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACGGTTCGCCGGGCAAATCCTGAATCa > 1:23767418/1‑67 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCaa < 1:17758415/68‑1 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:11614998/1‑67 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:13101192/1‑67 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:690054/1‑67 (MQ=255) ttGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac < 1:34045626/67‑1 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAaca > 1:1566936/1‑67 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac > 1:13191382/1‑66 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac > 1:14764479/1‑66 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:24437278/68‑1 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:27683482/68‑1 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:7556345/68‑1 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:5911203/68‑1 (MQ=255) aTTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCAGGGCAAATCCTGAATCAACACtt < 1:14608526/67‑1 (MQ=255) ttGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACtt > 1:16139974/1‑65 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:33719919‑M2/68‑6 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:9076512‑M2/68‑6 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:9381758‑M2/68‑6 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:20691346‑M2/67‑7 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:779500‑M2/67‑7 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:26907341‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:33064397/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:4474858/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTACTGCCcggcgg < 1:12040605/68‑1 (MQ=255) aCTCTCCGCAACCGCTGATTCAAACTGTTCGCCGGGCACATCCTGAATCAACACTTCCTGCCcggcgg < 1:25127298/68‑1 (MQ=255) ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc < 1:3166933/68‑1 (MQ=255) ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc < 1:11305947/68‑1 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc < 1:27292801/68‑1 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact > 1:5802722‑M2/1‑55 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:28459381/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:30813645/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:3009661/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:28149879/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:34352131/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:3729489/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATAAACACTTCCTGCCCGGCGGCCATc > 1:495008/1‑68 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:256878/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTGCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:10378850/67‑1 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAGCACTTCCTGCCCGGCGGCCATCACCGt > 1:3271054/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:10227567/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:7283264/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:823372/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:15881194/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:2121951/1‑68 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgtgctgtgggaatc > 1:21508652‑M1/1‑26 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa > 1:32097593/1‑68 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa > 1:26429434/1‑68 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATAAACACTTCCTGCCCGGCGGCCCTCACCGTTa > 1:17358290/1‑68 (MQ=255) gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAg < 1:33554416/68‑1 (MQ=255) ttCAACCAGTTCGCCGGGAAAAGCCTGAAGCCACACTACCtgcccggcgaactgtttgaatcaacggt > 1:20120567‑M2/1‑40 (MQ=255) ttCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttggccggggcacggtttgaatcaacggt > 1:14549937‑M1/1‑20 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc > 1:25486209/1‑68 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc > 1:19191290/1‑68 (MQ=255) tCAAACAGTTCGCCGGGCCggcagtgttgattcaggatttgcccggcggccggtttgaatcaacggtt > 1:15572844‑M1/1‑19 (MQ=255) tCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCg < 1:15952694/68‑1 (MQ=255) aaaGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:18927778/3‑68 (MQ=255) aCAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcgg > 1:7986446‑M1/1‑15 (MQ=255) aCAGTTCGCCGGGCAggaagtggtgattcaggatttgcccggcgaacagttggaagcaacggttgcgg > 1:26940342‑M1/1‑15 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGcgg > 1:2880607/1‑66 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:14159084/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:32424081/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:8895437/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:15261689/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:4201859/1‑68 (MQ=255) aCAGTTCGCCGGGCAAAACCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg > 1:3772646‑M2/1‑35 (MQ=255) cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAgg > 1:29598422/1‑68 (MQ=255) cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg > 1:1978489/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:29112261/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:12316810/1‑68 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt < 1:25775738/65‑1 (MQ=255) cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt < 1:34478814‑M1/67‑59 (MQ=255) gCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt > 1:34770787‑M1/1‑8 (MQ=255) ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt > 1:24090027/1‑67 (MQ=255) gggCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttc < 1:13013967‑M1/68‑64 (MQ=255) cAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGc < 1:10632418/67‑1 (MQ=255) aaaTCCTTAAGCAACACGTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCt < 1:30590401/67‑1 (MQ=255) | GCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCT > CP009273/4047431‑4047563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |