| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 275 (0.660) | 22 (0.060) | 10/94 | NT | 8.6% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 236 (0.670) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 347 total aligned reads displayed.
CGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG > CP009273/4047454‑4047584 | gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:9381758‑M2/68‑6 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 1:9076512‑M2/68‑6 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc > 1:25764148‑M2/1‑63 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg > 1:6710535‑M2/1‑61 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg < 1:20691346‑M2/67‑7 (MQ=255) aCTCTCCTCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:14587366/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg < 1:25108128‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggc > 1:34770787‑M2/1‑58 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:20384518/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:4474858/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:33429025/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:27339351/68‑1 (MQ=255) ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc < 1:32591836/68‑1 (MQ=255) ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc < 1:11305947/68‑1 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCTACACTTCCTGCCCGGCGGcc > 1:31807949/1‑68 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc < 1:34083326/68‑1 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc > 1:26918722/1‑68 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc > 1:33048452/1‑68 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa < 1:10896436/68‑1 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:30014710‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:27808366/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:28459381/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:10485353/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:32116968/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:34352131/1‑68 (MQ=255) cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc > 1:3915111/1‑68 (MQ=255) cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc > 1:22323131/1‑68 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:33615575/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:256878/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:2165381/67‑1 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:376836/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:12515338/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:10227567/1‑68 (MQ=255) ccGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaat > 1:15899417‑M2/1‑47 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa > 1:19138312/1‑68 (MQ=255) gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg > 1:9567319‑M2/1‑42 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt > 1:14463683‑M2/1‑40 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc > 1:25401550/1‑68 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTCAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt > 1:13181682‑M2/1‑40 (MQ=255) tCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCCTCACCGTTAGACAGCg > 1:13538008/1‑68 (MQ=255) tCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCg < 1:22851159/68‑1 (MQ=255) cAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCgg < 1:13362166/68‑1 (MQ=255) aaaGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:18927778/3‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg > 1:34474460‑M2/1‑35 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCCGCGGCAg > 1:7104439/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGcgg > 1:2880607/1‑66 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:5830434/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:642602/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:7478268/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:16544830/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:21348968/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:17234345/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:17959850/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:20128970/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:20928142/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGAAAGCGGCAg > 1:16031469/1‑68 (MQ=255) cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAgg > 1:29598422/1‑68 (MQ=255) cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg > 1:1978489/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAGgt > 1:32819694/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:26770595/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:29112261/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:12316810/1‑68 (MQ=255) ggccGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCCTCACCGTTAGCCAGCGGCAGgtg > 1:7832122/4‑68 (MQ=255) ttCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt > 1:11110545/1‑68 (MQ=255) gccGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt > 1:2649394/3‑68 (MQ=255) tCGCCGTGCAAATCCTCAATCAACACATCCagcccggcgaactgtttgaatcaacggttgcggagagt > 1:3559570‑M2/1‑30 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt < 1:15135211/65‑1 (MQ=255) gCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTAAGCCAGCGGCAGGTGttt < 1:3086378/67‑1 (MQ=255) ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt > 1:5447413/1‑67 (MQ=255) aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg < 1:2317682/68‑1 (MQ=255) aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg < 1:29540035/68‑1 (MQ=255) ccTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCTGGTGTTTTCCAGCTGgcg > 1:8666715/1‑67 (MQ=255) cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa < 1:31316640/68‑1 (MQ=255) gAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACg < 1:31690403/68‑1 (MQ=255) gAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACg < 1:27273166/68‑1 (MQ=255) aaTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGt > 1:17502381/1‑68 (MQ=255) aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt > 1:24348918/1‑68 (MQ=255) aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt > 1:609483/1‑68 (MQ=255) aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt > 1:11545032/1‑68 (MQ=255) aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt < 1:14837078/68‑1 (MQ=255) aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt > 1:26117223/1‑68 (MQ=255) aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACCtt > 1:4620727/1‑68 (MQ=255) tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg < 1:18736116/68‑1 (MQ=255) tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg < 1:30694767/68‑1 (MQ=255) cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg > 1:27537517/1‑68 (MQ=255) acTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg > 1:281784/1‑67 (MQ=255) acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg < 1:4999312/68‑1 (MQ=255) acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg < 1:33881973/68‑1 (MQ=255) acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg > 1:24858452/1‑67 (MQ=255) acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg > 1:23961710/1‑67 (MQ=255) cTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg > 1:1300216/1‑67 (MQ=255) tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc > 1:15703824/1‑67 (MQ=255) tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc > 1:11739553/1‑67 (MQ=255) tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc > 1:16098889/1‑67 (MQ=255) tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc > 1:4187848/1‑67 (MQ=255) tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCa < 1:15458896/68‑1 (MQ=255) tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGAGCACGTTGCCTGGcc > 1:25196787/1‑67 (MQ=255) ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc > 1:8146602/1‑68 (MQ=255) ccTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc < 1:3054417/68‑1 (MQ=255) cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg < 1:26355035/68‑1 (MQ=255) | CGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG > CP009273/4047454‑4047584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |