New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 253318 (0.760)19 (0.060) 11/92 NT 5.4% coding (64/66 nt) thrL thr operon leader peptide
?CP009273 = 278 400 (1.170)intergenic (+23/‑59) thrL/thrA thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1

Only 100 of 630 total aligned reads displayed.

TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTG  >  CP009273/213‑345
                                                                 |                                                                   
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                   >  1:8395321‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa                                                                    <  1:11090012‑M2/67‑2 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa                                                                    <  1:4477526‑M2/67‑2 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa                                                                    <  1:16732681‑M2/67‑2 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa                                                                    <  1:25302847‑M2/67‑2 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                  <  1:6963860‑M2/67‑4 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                  <  1:14061812‑M2/67‑4 (MQ=255)
   caccaccaTCACCATTACCACAGGTGACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                <  1:24417052‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                <  1:32292636‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                <  1:28530752‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                <  1:13740129‑M2/68‑6 (MQ=255)
     ccaccaTCACCATTACCACCGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                              >  1:25132276‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                              >  1:22263003‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                              >  1:15182584‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                              >  1:21810117‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                              >  1:33721894‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                              >  1:15877425‑M2/1‑61 (MQ=255)
      caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca                                                             >  1:10761373‑M2/1‑60 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCTGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                            >  1:12034343‑M2/1‑59 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                            >  1:23484950‑M2/1‑59 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                            >  1:32011734‑M2/1‑59 (MQ=255)
         catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccg                                                          >  1:9717375‑M2/1‑57 (MQ=255)
         catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCt                                                          <  1:1803091/68‑1 (MQ=255)
          atcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTg                                                         <  1:2287765/68‑1 (MQ=255)
           tcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTg                                                         >  1:17652486/1‑67 (MQ=255)
              ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacc                                                     >  1:21021248‑M2/1‑52 (MQ=255)
              ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg                                                     >  1:11821284/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCAGCTGACAgg                                                    >  1:9195041/1‑67 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                    >  1:12414976/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                    >  1:14851905/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                    >  1:34329680/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                    <  1:32902420/68‑1 (MQ=255)
                  tACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtg                                                 >  1:29158695‑M2/1‑48 (MQ=255)
                  tACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtg                                                 >  1:11361556‑M2/1‑48 (MQ=255)
                   aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:17074515/1‑68 (MQ=255)
                   aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:8976100/1‑68 (MQ=255)
                    ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCggg                                               <  1:26062431/68‑1 (MQ=255)
                    ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCggg                                               <  1:14542535/68‑1 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGCAAGTGCgc                                                >  1:21623872/1‑65 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:15252648/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:30263259/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:11218111/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:7233567/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:8015885/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:23237370/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                >  1:25886369/1‑66 (MQ=255)
                        aGGTAACGGTGCGGGCTGCCGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt                                           >  1:34718646/1‑68 (MQ=255)
                        aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGCCAGTGCGGGCttt                                           >  1:15956715/1‑68 (MQ=255)
                        aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt                                           >  1:24252428/1‑68 (MQ=255)
                        aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt                                           >  1:18661709/1‑68 (MQ=255)
                          gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt                                         >  1:16583232/1‑68 (MQ=255)
                          gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt                                         >  1:5470461/1‑68 (MQ=255)
                          gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt                                         >  1:31837900/1‑68 (MQ=255)
                           tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttt                                        >  1:15438594/1‑68 (MQ=255)
                              cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggtaatggtgatg                                     >  1:25530086‑M2/1‑36 (MQ=255)
                              cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGGtttttttt                                      >  1:33474333/1‑67 (MQ=255)
                              cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt                                      >  1:20521967/1‑67 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttttcg                                    >  1:26792241/1‑66 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc                                    >  1:19193972/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                   >  1:13393587/1‑68 (MQ=255)
                                  gCGGGCTGCCGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCgc                                  >  1:15672884/1‑66 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa                                  >  1:6168253/1‑67 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa                                  >  1:424108/1‑67 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTCGAcc                                >  1:16315517/1‑68 (MQ=255)
                                    gggCTGACGCGTACAGCAAACACAGAAAAAagcccgcaccgttacctgtggtaatggtgatggtggtg                               >  1:24688543‑M2/1‑30 (MQ=255)
                                    gggCTGACGCGTACAGCAAACACACAAAAAaccccgcaccgttacctgtggtaatggtgatggtggtg                               >  1:28306957‑M2/1‑30 (MQ=255)
                                      gCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCaaa                             >  1:28717039/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCaaa                             <  1:22733319/67‑1 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                            >  1:13126918/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                            >  1:20794634/1‑68 (MQ=255)
                                        tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAgg                           <  1:26326102/68‑1 (MQ=255)
                                        tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                            <  1:3078388/67‑1 (MQ=255)
                                         gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGt                          <  1:22088268/68‑1 (MQ=255)
                                         gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGt                          <  1:29945921/68‑1 (MQ=255)
                                         gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGt                          <  1:28044380/68‑1 (MQ=255)
                                           cgcgTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAATGGTa                         >  1:18405000/1‑67 (MQ=255)
                                              gTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACg                      <  1:17477992/67‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:29506127/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:31565742/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:5288519/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:23032991/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:3552542/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:19509049/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:19724020/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                   <  1:33239501/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAg                    <  1:381755/67‑1 (MQ=255)
                                                     aaaCACAGAAAAAcccccgcaccgttacctgtggtaatggtgatggtggtggtaatggtggtgc                  >  1:25747025‑M2/1‑13 (MQ=255)
                                                     aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGt                  <  1:5726907/64‑1 (MQ=255)
                                                     aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTa                 <  1:24038537/65‑1 (MQ=255)
                                                      aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACTAGGTaacaa             <  1:7515387/68‑1 (MQ=255)
                                                      aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaacaa             <  1:4797535/68‑1 (MQ=255)
                                                       acacAGAAAAACGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaacaac            <  1:22571648/68‑1 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGCCCAAAGGTAACGAGGTAACAAcc           >  1:32715317/1‑68 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaacaac            >  1:27511320/1‑67 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc           <  1:3052172/68‑1 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc           <  1:7779360/68‑1 (MQ=255)
                                                          caGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCAt         >  1:10264487/1‑68 (MQ=255)
                                                              aaaaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGa     >  1:31305803/1‑68 (MQ=255)
                                                                aaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt   <  1:27045628/68‑1 (MQ=255)
                                                                aaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt   <  1:20160278/68‑1 (MQ=255)
                                                                 |                                                                   
TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTG  >  CP009273/213‑345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.