New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 64557324 (0.780)18 (0.050) 10/94 NT 5.6% coding (1224/2352 nt) polB DNA polymerase II
?CP009273 = 64577 332 (0.950)coding (1204/2352 nt) polB DNA polymerase II

Only 100 of 503 total aligned reads displayed.

TACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64510‑64644
                                                                   |                                                                   
 aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAgcc                                                                     <  1:17152660/67‑1 (MQ=255)
 aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg                                                                    >  1:28998895‑M2/1‑67 (MQ=255)
 aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg                                                                    >  1:34429632‑M2/1‑67 (MQ=255)
     gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:16206895‑M2/68‑6 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:26451820‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:18918314‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:16825139‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgc                                                                   >  1:18055837‑M2/1‑62 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:24645229‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:26250734‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:33758425‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:4818002‑M2/1‑61 (MQ=255)
        tttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggc                                                             >  1:20679402‑M2/1‑60 (MQ=255)
        tttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggc                                                             >  1:5943367‑M2/1‑60 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggcttt                                                          >  1:32797604‑M2/1‑57 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:27637639/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:17038386/1‑67 (MQ=255)
           ataGTCCAGCACCAGAACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:10002732/1‑67 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:3749960/1‑68 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:22287103/1‑68 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:8765599/1‑68 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:5679100/1‑68 (MQ=255)
                ccagcaccagcaCTGAATCATAACGCCCTGGCCGTGACTCCATCACGTAGCCgccagggctttatgat                                                     >  1:9542313‑M2/1‑52 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGt                                                       <  1:25833263/66‑1 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:429248/1‑68 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:19665442/1‑68 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:13267615/1‑68 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCCCCAGGGCTGGCGGgc                                                     >  1:21010993/1‑68 (MQ=255)
                 cagcaccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcg                                                    <  1:28284029/68‑1 (MQ=255)
                 cagcaccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcg                                                    <  1:19180234/68‑1 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:12510241/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:14682399/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:31664726/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:21909240/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:15732553/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:31032780/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:27376657/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATACATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:29705256/1‑67 (MQ=255)
                      ccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagtg                                               >  1:12671958‑M2/1‑46 (MQ=255)
                          cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:26809122/1‑67 (MQ=255)
                          cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:23581197/1‑67 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:26673253/1‑68 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:14995727/1‑68 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:25201847/1‑68 (MQ=255)
                            cggAATCATAAAGCGCTGGCCGTGAATGCATCACGACGCGGCGAGGGCTGGCGTGCGGCGGCACTTc                                          <  1:22591101/65‑1 (MQ=255)
                             tGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGc                                        <  1:9784369/68‑1 (MQ=255)
                              gAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGcc                                       >  1:1158062/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:7862938/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:7401817/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     <  1:675542/68‑1 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:12997223/1‑68 (MQ=255)
                                aTCATAAAGCACTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:25637489/1‑68 (MQ=255)
                                  cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:20253119/68‑1 (MQ=255)
                                  cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:6363011/68‑1 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:8484846/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:33115106/1‑68 (MQ=255)
                                       aGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAg                               >  1:8218724/1‑67 (MQ=255)
                                       aGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAg                               >  1:32996801/1‑67 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:9122195/1‑68 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:30220862/1‑68 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:27795609/1‑68 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:18792737/1‑68 (MQ=255)
                                         cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:30691370/1‑67 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:5036593/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:32647175/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:10456681/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:2207495/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:18556537/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGAGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:32395374/1‑68 (MQ=255)
                                           cTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGcgcg                          <  1:31997678/68‑1 (MQ=255)
                                           cTGGCCGTGAATCCATCACGTAGCCGCCAGGGCT‑GCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:28664103/68‑1 (MQ=255)
                                            tGGGCGTGATTCCATCACGTAGCAGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:5436410/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:24369665/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:10767231/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:11300043/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:23097439/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:6982352/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:27090233/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:34847586/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:1374685/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:14230761/68‑1 (MQ=255)
                                              gCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACa                       >  1:16652806/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:15255788/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:13427082/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:17654463/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:5284833/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:18215819/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:29126867/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:1649855/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:25594000/1‑68 (MQ=255)
                                                 gTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATaa                    <  1:34054839/68‑1 (MQ=255)
                                                 gTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATaa                    <  1:14465342/68‑1 (MQ=255)
                                                     aTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCa                 >  1:12014239/1‑67 (MQ=255)
                                                      tCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAgc               <  1:34557152/68‑1 (MQ=255)
                                                           cACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          <  1:13506094/68‑1 (MQ=255)
                                                            aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:3976484/1‑67 (MQ=255)
                                                             cGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGGCATAACCAGCGCGATGc        >  1:24102227/1‑68 (MQ=255)
                                                               tAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCAt      >  1:25429023/1‑68 (MQ=255)
                                                                 gccgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTc    >  1:32512139/1‑68 (MQ=255)
                                                                   cgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTcgc  <  1:15967856/68‑1 (MQ=255)
                                                                   |                                                                   
TACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64510‑64644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.