New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =388 (0.930)28 (0.080) 9/90 NT 6.9% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 441 (1.320)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 732 total aligned reads displayed.

AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800
                                                                  |                                                                  
tccggcgctgcgccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgcc                                                                   <  1:8614621‑M2/2‑1 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc                                                                   <  1:32830757/65‑1 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga                                                                >  1:31017202/1‑68 (MQ=255)
    tCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               <  1:34424545/68‑1 (MQ=255)
    tCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               <  1:17119579/68‑1 (MQ=255)
    gCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               <  1:7870195‑M1/67‑1 (MQ=255)
    gCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               <  1:22110325‑M1/67‑1 (MQ=255)
    gCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               <  1:26063773‑M1/67‑1 (MQ=255)
     CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCggagc                                                              <  1:33423669‑M1/68‑2 (MQ=255)
      GCTGCGCCGCTTTCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:4482521‑M1/67‑1 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCggagc                                                              <  1:4730985‑M1/67‑2 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:8170219‑M1/67‑1 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:28082598‑M1/67‑1 (MQ=255)
         GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa                                                          >  1:33612218‑M1/1‑68 (MQ=255)
             cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGAAcc                                                       <  1:17297858‑M2/14‑1 (MQ=255)
             CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCa                                                      >  1:12765980‑M1/1‑68 (MQ=255)
              GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     >  1:1536614‑M1/1‑68 (MQ=255)
              GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     >  1:2977676‑M1/1‑68 (MQ=255)
              GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     >  1:14008520‑M1/1‑68 (MQ=255)
                  tCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCaa                                                 <  1:27901629/68‑1 (MQ=255)
                     aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:25208608/1‑68 (MQ=255)
                     aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:24386540/1‑68 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:25395612/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:10164619/1‑67 (MQ=255)
                       cggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGAACCGATCAACGTGc                                            <  1:10005180‑M2/25‑1 (MQ=255)
                       cggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:26692665‑M2/25‑1 (MQ=255)
                       cggctactggccggtaaccggggagcccgatagcggcgccgcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:16944887‑M2/25‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:27655992/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:1133176/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:15919950/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:25695335/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:15663574/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:27106565/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:17650739/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:14804782/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:34244475/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:12300741/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:30053958/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:13624527/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:31371862/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:31696541/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:32009572/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:18467417/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:9581511/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:8870865/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:20277188/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:10850970/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:21674831/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:22844513/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:18971926/68‑1 (MQ=255)
                         cACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCg                                          <  1:7243650/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:28510758/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:33200423/68‑1 (MQ=255)
                                 cccGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:11746973/67‑1 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  >  1:11074126/1‑68 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:4265574/68‑1 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:9314107/68‑1 (MQ=255)
                                   cGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGt                                <  1:24822642/68‑1 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:31227557/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:29398456/1‑68 (MQ=255)
                                     cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:3600758/1‑67 (MQ=255)
                                     cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:2047345/1‑67 (MQ=255)
                                     cacaGTAGCCGATCACCGGCGGCGCAGCGCAGGAGAGCGAACCAATCAACCTGCCGTAGACAGAGTg                               >  1:626608/1‑67 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:23785820/1‑68 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:1289451/1‑68 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:5294740/1‑68 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:32413979/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:9022860/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:3468641/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:5059733/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:18059939/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:22517743/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:22295122/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:19657578/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:21274598/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           <  1:3074472/65‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           <  1:11910344/65‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTc                        >  1:19214376/1‑68 (MQ=255)
                                            gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       >  1:20928905/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:2193260/1‑68 (MQ=255)
                                               gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    <  1:2646170/68‑1 (MQ=255)
                                               gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    <  1:23251156/68‑1 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTTGACAGAGTGGCGTTTCATGt                    >  1:6615344/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:14681379/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:7648122/1‑67 (MQ=255)
                                                 tCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTAc                  <  1:4041593/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCACCGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:14394144/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:19841775/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:1946924/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:24273236/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:6890199/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:16678064/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:16508597/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:33908085/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:29194338/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGAGTTTCATGTACAgg               <  1:27417362/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTACCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:30462250/68‑1 (MQ=255)
                                                     cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc              <  1:5752270/68‑1 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            >  1:28768291‑M2/12‑68 (MQ=255)
                                                            gcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATATAc       >  1:13391535‑M2/7‑68 (MQ=255)
                                                                  |                                                                  
AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.