| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 340 (0.820) | 18 (0.050) | 6/96 | NT | 5.1% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 379 (1.060) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 505 total aligned reads displayed.
CCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519465‑519599 | cACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctc < 1:3747235/68‑1 (MQ=255) ccGCAGGCGCAGCGTGGGGAAGAGGCCCGCTGCTCTTGGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:11494053/67‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:9708964/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:494594/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:7477071/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:18297239/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:1958754/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:32217598/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:21822029/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:12242720/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:28876567/68‑1 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctc > 1:12944947/1‑68 (MQ=255) ggCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctca > 1:27949749/1‑67 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:20882516/67‑1 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:32962418/67‑1 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:18866671/67‑1 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:30291224/67‑1 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:34777413/67‑1 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:16500002/67‑1 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcag < 1:27462120/66‑1 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctca > 1:15314975/1‑68 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctca > 1:1677702/1‑68 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCGTCGCTATCTTCATCTGACAGTTCCCGCCCTCTctcagcctca > 1:33494465/1‑68 (MQ=255) cGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctcagc > 1:28381714/1‑68 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:18451173/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCTCTCTCTCAGCCTCAGCGTTcc < 1:4444570/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:14712797/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:25292358/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:22121507/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:7053449/68‑1 (MQ=255) gAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc > 1:11087901/1‑67 (MQ=255) gAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc > 1:21662146/1‑67 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:849768/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc > 1:20148042/1‑67 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:7858770/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:14945764/1‑68 (MQ=255) gctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGacac > 1:4305276‑M2/41‑67 (MQ=255) gctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGacac > 1:2375365‑M2/41‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:26444054/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac < 1:14266714/67‑1 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:17170106/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:8784256/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:14492775/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:22539677/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:24610995/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGaca < 1:14005920/66‑1 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCACTCTCAGACTCAGCGTTCCCCGacac > 1:12542577/1‑67 (MQ=255) cGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACt < 1:22991067/68‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:30898755/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:24083870/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:12657874/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:18636511/67‑1 (MQ=255) tctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCgg > 1:13595183/1‑68 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:33940677/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:30105794/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:32400111/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:9239282/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:1048078/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:2607346/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:16676713/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:16098358/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:10659802/68‑1 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGCCACACTGCCCGGTACCg > 1:32056373/1‑68 (MQ=255) tcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGaa > 1:17999034‑M2/26‑68 (MQ=255) tcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGaa > 1:13848714‑M2/26‑68 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGaa > 1:5653960/1‑68 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGa < 1:34445393/67‑1 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGa < 1:15077504/67‑1 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGa < 1:13179130/67‑1 (MQ=255) aTCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTCCCGAAt > 1:19880605/1‑68 (MQ=255) tcttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAAt > 1:29573116/1‑67 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:3949649/1‑68 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACgg < 1:21296080/68‑1 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACgg < 1:31594700/68‑1 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACgg < 1:24775901/68‑1 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACgg < 1:17726056/68‑1 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACg > 1:26648699/1‑67 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACg > 1:6730544/1‑67 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCACCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACgg < 1:33573093/68‑1 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGc < 1:26972198/68‑1 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAACACGGc < 1:24955803/68‑1 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:9026473/1‑67 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:11864713/1‑67 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:6264470/1‑67 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:15899464/1‑67 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:15652972/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:17400796/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:5284704/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg > 1:2866524/1‑68 (MQ=255) ttCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:25775044/46‑1 (MQ=255) tcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGCCAgggg > 1:33216430‑M2/9‑68 (MQ=255) tcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAgg < 1:10041590‑M2/58‑1 (MQ=255) cccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGt < 1:4630289‑M2/61‑1 (MQ=255) cccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGt < 1:16296258‑M2/61‑1 (MQ=255) cccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGt > 1:27297637‑M2/8‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:19228053‑M2/4‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:23485354‑M2/4‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:29297088‑M2/4‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:9367657‑M2/4‑68 (MQ=255) tctctcAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGcc < 1:8274232/68‑1 (MQ=255) | CCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519465‑519599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |