| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1092949 = | NA (NA) | 19 (0.050) | 6/100 | NT | 22.1% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 75 (0.180) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
Only 100 of 351 total aligned reads displayed.
CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 | cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:16914638/68‑1 (MQ=40)cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:11518327/68‑1 (MQ=40)cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:14169797/68‑1 (MQ=40)cGAAAAAAAACCCCGTACTTTCGTACGAGCGCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:10356639/68‑1 (MQ=255)aaagaagcgctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:33641088‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:201965‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:33424830‑M2/1‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtttattgcacacaccggggggatgagaagcc < 1:13408604‑M2/2‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtatcttgcacacaccggggggatgagaagcc < 1:23417446‑M2/2‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:21251620‑M2/2‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:20710743‑M2/2‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:12145974‑M2/2‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:18362649‑M2/67‑67 (MQ=255) agacgagctcgtacgaaagtacgggcttttttttcgtatattgcacccaccggggggatgagaagccc < 1:1807027‑M2/3‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtttattgcacacaccggggggatgagaagcc > 1:7666854‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccc < 1:12445486‑M2/3‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:9070447‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:11923463‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:27030195‑M2/66‑67 (MQ=255) aaaaaaaaGCCCTTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:24973514/68‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtttattgcacacacctggtggaagcgaagcccc > 1:9316333‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:25609408‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:6801990‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:9585438‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:24225358‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:25160540‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:25891491‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:2626862‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:8242425‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:26532288‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:28748573‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:308181‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:31866710‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:33045471‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:3414155‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:3662125‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:4730977‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:5651954‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:13655044‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:15790637‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:15890645‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:13619851‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:13217139‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:11384612‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtaaattgcacacaccggggggatgagaagcccc > 1:4372403‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttctcgtatattgcacacaccggggggatgagaagcccc > 1:15045738‑M2/65‑68 (MQ=255) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc < 1:14722421/68‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc < 1:332278/68‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:7105503/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:10128625/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:4137465/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:14427102/67‑1 (MQ=40) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:2269713‑M2/64‑68 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:15352147‑M2/64‑68 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:30678093‑M2/64‑68 (MQ=255) agagctcgtacgaaagtacgtgcttttttttcgtatattgcacacaccggggggttgagaagCCCCg > 1:31043647‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:34372560‑M2/4‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:19220856‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:2834110‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:10005988‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:29217843‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa < 1:17406416‑M2/6‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa < 1:34737969‑M2/6‑1 (MQ=255) agagcgcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:31570319‑M2/5‑1 (MQ=255) aaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGa > 1:32396785/1‑68 (MQ=40) aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:21823286/68‑1 (MQ=40) aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:2204219/68‑1 (MQ=40) aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:33795412/68‑1 (MQ=40) cctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATAc < 1:8488270‑M2/9‑1 (MQ=255) aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:29768947/68‑1 (MQ=40) aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:24610707/68‑1 (MQ=40) aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:5186951/1‑68 (MQ=40) tcgtacgaaagtacgggcttttttttcgtatattgcacccaccggggggatgagaagCCCCGATACGt < 1:17767273‑M2/11‑1 (MQ=255) tcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:7950463‑M2/58‑59 (MQ=255) tcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATAc < 1:26704768‑M2/9‑1 (MQ=255) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGCACCCCCGATACGtt > 1:4971722/1‑68 (MQ=255) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:19719467/67‑1 (MQ=37) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:2003034/66‑1 (MQ=37) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:586548/66‑1 (MQ=37) tacgaacgtacgggcttttttttcgtatattgcccacaccggggggatgagaagCCCCGATACGTTGc < 1:16642801‑M2/14‑1 (MQ=255) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:12905608/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:10543162/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:10940569/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:22145634/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:32543826/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:16262747/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:13259067/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:26557114/68‑1 (MQ=35) gTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc < 1:3209786/68‑1 (MQ=33) acgaacgtacgggcttttttttcgtatatagcacacaccggggggatgagaagCCCCGATACGTTGc < 1:22956950‑M2/14‑1 (MQ=255) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:32961766‑M2/14‑1 (MQ=255) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:5395061‑M2/14‑1 (MQ=255) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:8802851‑M2/14‑1 (MQ=255) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:27839307‑M2/14‑1 (MQ=255) acgaaagtacgggcttttttttcgtaaattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:11076516‑M2/14‑1 (MQ=255) accaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:6964114‑M2/14‑1 (MQ=255) tACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCg > 1:21462846/1‑68 (MQ=31) tACTTTCGTACGAGCCCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCg < 1:18887062/68‑1 (MQ=14) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt > 1:27437210‑M2/1‑68 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt > 1:23671743‑M2/1‑68 (MQ=255) | CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |