| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2747582 = | 360 (0.860) | 27 (0.080) | 8/94 | NT | 9.4% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 220 (0.630) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
Only 100 of 565 total aligned reads displayed.
CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTC > CP009273/2747538‑2747671 | cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt > 1:6389217/1‑68 (MQ=255) attgccgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACt < 1:22810975‑M2/4‑1 (MQ=255) attgccgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACt < 1:13890390‑M2/4‑1 (MQ=255) aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTa < 1:7555341/65‑1 (MQ=255) aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt < 1:21789856/67‑1 (MQ=255) aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt < 1:22083921/67‑1 (MQ=255) aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc < 1:15798387/68‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:8056611‑M2/8‑1 (MQ=255) cgttgaggtggcttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCtt < 1:6736677‑M2/8‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:10099652/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:19944992/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:21353080/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:17565503/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:28551627/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:29867891/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:12396333/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt < 1:3817343/67‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:28819655/66‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:32917784/66‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:34769960/66‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:9659582/66‑1 (MQ=255) cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt < 1:18949089/66‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGTGTCACTCGCTGCAGGTACTGCTtct < 1:32163911/68‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:26671635/68‑1 (MQ=255) aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct < 1:18188439/68‑1 (MQ=255) ggtggcttatgcgctacctgagacgcagtacctgcagcgagtgacgctgcaggTACTGCTTCTCAgg < 1:13549041‑M2/14‑1 (MQ=255) cgcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt > 1:31268513/1‑68 (MQ=255) cgcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt > 1:30567088/1‑68 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGTTTCTCAGGt < 1:2580344/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:32731322/67‑1 (MQ=255) gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt < 1:10680471/67‑1 (MQ=255) cttatgcgctacctgagaagcagtgcctgcagcgagtgacgctgcaggTACTGCTTCTCAGGTAgcg < 1:5517982‑M2/19‑1 (MQ=255) cttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCTTCTCAGGTAgcg < 1:11782753‑M2/19‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCTTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:16376863/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTTCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:4854248/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:11210715/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc < 1:28064467/68‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:22332734/67‑1 (MQ=255) aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcg < 1:3354871/67‑1 (MQ=255) ttatgcgctacctgagaagcagtacctgcagcgagtgacgctgcaggTACTGCTTCTCAGGTAgcgc < 1:1212477‑M2/20‑1 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa > 1:30365882/1‑67 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa > 1:26428254/1‑67 (MQ=255) ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg < 1:11696533/68‑1 (MQ=255) ttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCa < 1:4347438/68‑1 (MQ=255) cAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc < 1:7291649/68‑1 (MQ=255) aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTc > 1:11096568/1‑68 (MQ=255) ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTcc > 1:25367780/1‑67 (MQ=255) aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg < 1:23287507‑M1/59‑1 (MQ=255) agcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGc < 1:25078353‑M1/61‑1 (MQ=255) agcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGc < 1:25559622‑M1/61‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa < 1:3521063/68‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa < 1:27185651/68‑1 (MQ=255) gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCa < 1:24075370/67‑1 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAt < 1:5794720/67‑1 (MQ=255) cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAt < 1:15848363/67‑1 (MQ=255) CCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtttt < 1:4697230‑M1/67‑1 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:412764‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:27578315‑M1/1‑68 (MQ=255) CTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTAc > 1:18331892‑M1/1‑68 (MQ=255) GCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:30812842‑M1/65‑1 (MQ=255) GCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTa < 1:23656116‑M1/65‑1 (MQ=255) ccGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCCCCGGCAATTTTACCTg < 1:2449688‑M1/66‑1 (MQ=255) CAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:9435071‑M1/68‑1 (MQ=255) CAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:17347307‑M1/68‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTTGCGCATAAGCCCCCTCAACGGCAATTTTACCTg < 1:20676093‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:3198190‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:16978503‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:12586977‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:5251618‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:17902833‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:21626652‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:18759679‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:31056594‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:19324966‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:8493219‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:9252458‑M1/67‑1 (MQ=255) AGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTg < 1:29366392‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:20304721‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:7689513‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:34467877‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:14711459‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:12967020‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:28320521‑M1/67‑1 (MQ=255) CGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:33374135‑M1/67‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:654597‑M1/66‑1 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc > 1:18651168‑M1/1‑66 (MQ=255) GTCACTCGCTGCAGGTACTGCTTCACAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGc < 1:29064746‑M1/66‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:3387676/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACt < 1:29623496/67‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTg < 1:14972972/68‑1 (MQ=255) cACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAACTTTACCTGGCACt < 1:25170410/67‑1 (MQ=255) tCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaa > 1:15369257/1‑68 (MQ=255) cgctgcaggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTaaa < 1:14161872‑M2/59‑1 (MQ=255) tgcaggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACct < 1:31456038‑M2/62‑1 (MQ=255) aggTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACctct < 1:23881504‑M2/64‑1 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAAGGGCAATTTTACCTGGGACTGTAACCCTCTTTc > 1:11359071/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:6063702/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:2603376/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:8973038/1‑67 (MQ=255) tACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTc > 1:16646190/1‑67 (MQ=255) | CAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTTACCTGGCACTGTAAACCTCTTTC > CP009273/2747538‑2747671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |