| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701943 = | 48 (0.120) | 3 (0.010) | 3/88 | NT | 5.5% | intergenic (‑878/+33) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701970 = | 65 (0.200) | intergenic (‑905/+6) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 230 total aligned reads displayed.
GAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGG > CP009273/3701928‑3702037 | gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:26614278/1‑68 (MQ=31)caccgaccaaattagAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc < 1:22596141‑M1/53‑1 (MQ=255) aGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCg > 1:13851022/1‑68 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTTGGTGATAGAGGATTCGa > 1:19746286/1‑68 (MQ=25) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:8540519/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:5976362/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:15757894/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:3631255/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:34039469/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:12218828/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:11849581/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:31708541/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:11285535/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:25641348/1‑68 (MQ=35) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGaa > 1:21470521/1‑67 (MQ=37) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGaa > 1:14723217/1‑67 (MQ=37) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGaa > 1:418478/1‑67 (MQ=37) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:32644438/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:15125429/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:11132071/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTAATAGAGGATTCGAAcc < 1:34316869/68‑1 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGCGGGTGCTTTTCGAATTTGGTCGGTGATAGAGGATTCCAACCt > 1:30518816/1‑67 (MQ=11) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt > 1:4531361/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt > 1:19070225/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt > 1:4028177/1‑67 (MQ=255) gATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTcc > 1:28020942/1‑68 (MQ=255) aTGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCg > 1:12518441/1‑68 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTc < 1:33658602/65‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTc < 1:13653176/65‑1 (MQ=255) tcgAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAc < 1:3064884‑M1/64‑1 (MQ=255) cAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAc > 1:18281523/1‑67 (MQ=255) aaaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAccc < 1:31571135/68‑1 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:24598420/68‑1 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:6185125/68‑1 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:16490927/68‑1 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt < 1:4090947‑M1/68‑1 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:8150777‑M1/1‑68 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt < 1:27707160‑M1/68‑1 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt < 1:1261817‑M1/68‑1 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt < 1:32544855‑M1/68‑1 (MQ=255) AAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt < 1:30673475‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg < 1:3931502‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg < 1:27090622‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg < 1:20798206‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg < 1:5791512‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg < 1:24930932‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg < 1:11681154‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg < 1:23193664‑M1/67‑1 (MQ=255) CCTGCTCGTTGAGCAGGCTTTTCGATTTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:3804289‑M1/67‑1 (MQ=255) CCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:24494325‑M1/67‑1 (MQ=255) CCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:5632419‑M1/67‑1 (MQ=255) CCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:26571063‑M1/67‑1 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt > 1:14088140‑M1/1‑66 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt > 1:1683403‑M1/1‑66 (MQ=255) GCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCg > 1:3004427‑M1/1‑68 (MQ=255) TCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGACCCTCCGCCCCCTTCGTCCCGa < 1:18110110‑M1/67‑1 (MQ=255) TCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGaa > 1:12949249‑M1/1‑68 (MQ=255) gcaggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGt > 1:14429831‑M2/11‑67 (MQ=255) gcaggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGt > 1:917936‑M2/11‑67 (MQ=255) caggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGCCCCCTTCGTCCCGAACGAAGTgc > 1:17970083‑M2/10‑68 (MQ=255) caggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc > 1:8627691‑M2/10‑68 (MQ=255) caggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc > 1:9855308‑M2/10‑68 (MQ=255) caggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc > 1:1298767‑M2/10‑68 (MQ=255) aggcttttCGAATTTGGTCGGTGCTAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:22420485‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc < 1:10335018‑M2/59‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:7666181‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:18524259‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:32876958‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:23132338‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:24089847‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:28364837‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGNCCCGAACGAAGTg < 1:1748977‑M2/58‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGTATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:14847194‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGCCCCCTTCGTCCCGAACGAAGTGCGCt > 1:18153378‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:1316706‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:11600413‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:8809916‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:17715217‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:10748080‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:7563643‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:7341293‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:7132183‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:6907844‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:6541677‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:15979862‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:16317770‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:1671461‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:17112908‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:29418451‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:21610823‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:21714748‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:21867863‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:22742466‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:2375388‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:32054029‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:27577050‑M2/62‑1 (MQ=255) cttttCGAATTTGGGCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:34250234‑M2/62‑1 (MQ=255) cttttCGAATTTGCTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:24134043‑M2/62‑1 (MQ=255) ttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTAc < 1:30215632‑M2/64‑1 (MQ=255) cGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAg > 1:26333086/1‑67 (MQ=255) | GAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGG > CP009273/3701928‑3702037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |