| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3808465 | NA (NA) | 4 (0.010) | 3/92 | NT | NA | noncoding (9/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3808469 | NA (NA) | noncoding (13/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 327 total aligned reads displayed.
GGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGTTCC > CP009273/3808402‑3808535 | tgatTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtca < 1:30330779‑M2/68‑4 (MQ=255) atTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcat < 1:11522554‑M2/67‑5 (MQ=255) tttGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccg > 1:28677845‑M2/1‑61 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtc > 1:6709094‑M2/1‑56 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:32701316/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:27261398/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:26406013/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:760912/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:8410900/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:33172075/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:15301808/1‑68 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt < 1:3336517/68‑1 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt > 1:793919/1‑68 (MQ=255) cGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTc < 1:6196516/68‑1 (MQ=255) gCCGCTAATTGCGGCACAGTTGGAGTAATATGACGCCCGATGACTTTTCATCCGTCGAGTTTCTTTaa > 1:8136053/1‑68 (MQ=255) cGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAAc < 1:18926425/68‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:12907966/67‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:9209909/67‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:34323664/67‑1 (MQ=255) tGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCaa > 1:14500596/1‑66 (MQ=255) gCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAct < 1:14013677/68‑1 (MQ=255) gCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAc > 1:33732795/1‑67 (MQ=255) gCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct > 1:12411144/1‑67 (MQ=255) gCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct > 1:19129859/1‑67 (MQ=255) cacaGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtcatattactgcaactgtgccgca > 1:18806169‑M2/1‑33 (MQ=255) cacaGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtcatattactgcaactgtgccgca > 1:13570910‑M2/1‑33 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:25300154/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:24867338/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:3628620/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc < 1:25777926/67‑1 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:5541940/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:26974886/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:4107805/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:16408174/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:12702706/1‑67 (MQ=255) aGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTcgcg > 1:31974614/1‑68 (MQ=255) gTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGa > 1:27521443/1‑68 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTcgcg < 1:13688476/65‑1 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATa > 1:9400858/1‑68 (MQ=255) attAATATGACGCCGGATGATTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:11162307/66‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:34804432/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:22518081/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:30806279/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:30024709/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:15725350/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:14881023/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:6910996/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:6277226/1‑67 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:28908140/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:19514624/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:2805671/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:25980937/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:608248/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:34463279/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:23842419/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:6459637/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:13426895/1‑68 (MQ=255) aaTCTGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:28337560/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGcc < 1:23360318/66‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:32349169/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:27898775/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:22981568/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:1723236/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:16164807/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:12212196/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:10015275/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCtt > 1:5324033/1‑68 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCtt > 1:13193384/1‑68 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCGAAACTCTTCGCGATAGGCCTTac > 1:213117/1‑66 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:24114176/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:31374353/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:7329575/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:21381975/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:20336754/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:17563053/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:32139190/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:24652013/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:20644076/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:5022401/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:11607908/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:5936263/1‑67 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:2657015/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:22856945/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:8669378/68‑1 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:9767950/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:4284890/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:29738842/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:27378280/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:26197605/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:20872901/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:16989998/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:10160019/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCGTCGCGATAGGCCTTAAccgcc > 1:10627612/1‑67 (MQ=255) ccGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgccg > 1:18688164/1‑67 (MQ=255) cGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACcgccgc < 1:31769838/67‑1 (MQ=255) cGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACcgccgc < 1:19852208/67‑1 (MQ=255) aTGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGa > 1:25512223/1‑68 (MQ=255) cTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGtt < 1:16259303/68‑1 (MQ=255) ttttCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGtt > 1:22086314/1‑67 (MQ=255) tttCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGTTcc > 1:454348/1‑68 (MQ=255) | GGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGTTCC > CP009273/3808402‑3808535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |