| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3999966 | 498 (1.190) | 25 (0.060) | 7/108 | NT | 5.5% | coding (743/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | CP009273 | = 4000004 | 378 (0.940) | coding (781/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
Only 100 of 453 total aligned reads displayed.
AGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCC > CP009273/3999937‑4000070 | aGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGaa > 1:3878272/1‑68 (MQ=255) cATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:12137544/1‑68 (MQ=255) aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:18864800/1‑67 (MQ=255) aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:4720426/1‑67 (MQ=255) aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:32977308/1‑67 (MQ=255) ttATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgc < 1:20351361/68‑1 (MQ=255) tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGcgcg > 1:30185685/1‑68 (MQ=255) tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGcgcg > 1:17670234/1‑68 (MQ=255) tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGcgcg > 1:24899952/1‑68 (MQ=255) tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGcgcg > 1:11562768/1‑68 (MQ=255) tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGcgcg > 1:6619831/1‑68 (MQ=255) cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGcgcg > 1:15794078/1‑67 (MQ=255) cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcgg < 1:21284250/68‑1 (MQ=255) cTGCAACAGCCGCGCGTAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg < 1:6101609/68‑1 (MQ=255) cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg < 1:31370475/68‑1 (MQ=255) cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg < 1:2526643/68‑1 (MQ=255) cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg < 1:17491331/68‑1 (MQ=255) tGCAACCGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCggcggc < 1:32604790/68‑1 (MQ=255) tGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCggcggc < 1:24317037/68‑1 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:26342613/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:14633989/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:33112339/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:16203090/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:11200332/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:12849117/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCAGCGCGCCTGCAAAGCAAGGGAATTAGCGCggcggca > 1:10160804/1‑67 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACAGATGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:9324929/1‑66 (MQ=255) aaCCGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAAttagcgcggctgttgc > 1:17099644‑M2/1‑52 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAAttagcgcggctgttgc > 1:7884472‑M2/1‑52 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAAttagcgcggctgttgc > 1:29266220‑M2/1‑52 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAAttagcgcggctgttgc > 1:2405351‑M2/1‑52 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAAttagcgcggctgttgc > 1:23333637‑M2/1‑52 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcggtgt < 1:33339187/67‑4 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt < 1:18205938/67‑1 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt < 1:32233315/67‑1 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt < 1:26621415/67‑1 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa > 1:12453769/1‑68 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa > 1:30510727/1‑68 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa < 1:28447317/68‑1 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa > 1:23577013/1‑68 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa > 1:22436295/1‑68 (MQ=255) aCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa > 1:4961079/1‑67 (MQ=255) aCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTAt < 1:31707689/68‑1 (MQ=255) aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa > 1:10332404/1‑68 (MQ=255) aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa > 1:1807400/1‑68 (MQ=255) aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa > 1:29106733/1‑68 (MQ=255) aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa > 1:6992295/1‑68 (MQ=255) ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt > 1:22778472/1‑67 (MQ=255) ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt > 1:21957422/1‑67 (MQ=255) ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt > 1:26964450/1‑67 (MQ=255) cgcgcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAAttagcgcggctgttgcagtaga > 1:16750150‑M2/1‑46 (MQ=255) gcgAAAGTAGAAGCCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCgg < 1:27531340/68‑1 (MQ=255) gcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCgg < 1:8891357/68‑1 (MQ=255) gAAAGAAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCggg < 1:26836/67‑1 (MQ=255) aaGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCt < 1:1511964/67‑1 (MQ=255) aGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTgg < 1:340609/68‑1 (MQ=255) gTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGa > 1:4282344/1‑68 (MQ=255) agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaa < 1:9190842/67‑1 (MQ=255) agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGa < 1:11101066/66‑1 (MQ=255) agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGa < 1:3668113/66‑1 (MQ=255) aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat > 1:4410145/1‑68 (MQ=255) aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat > 1:24730150/1‑68 (MQ=255) aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat > 1:5739691/1‑68 (MQ=255) aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat > 1:10652063/1‑68 (MQ=255) aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat > 1:7291732/1‑68 (MQ=255) agaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaata > 1:21632778/1‑68 (MQ=255) agaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat < 1:28672407/67‑1 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:8537336/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:34672864/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:5477429/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:18518262/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:19580419/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:13314967/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:22983426/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:15427295/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:14369805/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:25655633/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:14194174/1‑68 (MQ=255) acacCGCTGCGCGCCTGCAAAACAGGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat > 1:23472111/1‑68 (MQ=255) acCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt > 1:11751103/1‑68 (MQ=255) acCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt > 1:2014891/1‑68 (MQ=255) acCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt > 1:13551623/1‑68 (MQ=255) gCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTc > 1:30864146/1‑67 (MQ=255) tGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTcgc > 1:19208737/1‑67 (MQ=255) gcgcCTGCTAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGcc < 1:13766630/67‑1 (MQ=255) gcgcCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGcc < 1:28121817/67‑1 (MQ=255) gcCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAt > 1:8040628/1‑68 (MQ=255) gcCGGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCGGGAAAATAATGTGCGCGCCGa < 1:10028750/67‑1 (MQ=255) cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt < 1:29850148/68‑1 (MQ=255) cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt < 1:33635277/68‑1 (MQ=255) cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt < 1:8281827/68‑1 (MQ=255) atGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt < 1:34337014/67‑1 (MQ=255) aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa > 1:2957863/1‑68 (MQ=255) aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa > 1:20843984/1‑68 (MQ=255) aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa > 1:7659688/1‑68 (MQ=255) aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa > 1:32765491/1‑68 (MQ=255) gCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGaa > 1:9723329/1‑68 (MQ=255) gCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGaa > 1:22231978/1‑68 (MQ=255) aaGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGaa < 1:7402456/66‑1 (MQ=255) aaTTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTcc > 1:26066031/1‑68 (MQ=255) | AGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCC > CP009273/3999937‑4000070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |