| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 4 (0.010) | 4/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 274 total aligned reads displayed.
CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:23942257/1‑68CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:1652932/1‑68CCAGGCATGATAAAACGCACCAACAACGCTTAAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:20866160/1‑68 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:8143369/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:33715888/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:12465717/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:14914124/68‑1 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGCCAAAGTAAAAAG > 1:8757616/1‑67 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:4741086/1‑67 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:359902/1‑67 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:22654869/1‑67 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:14418573/1‑67 GCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCT > 1:26160625/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:15178574/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCC < 1:9378491/66‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:4405618/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:30498012/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:30453228/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:19355892/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:35017202/65‑1 tTGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:32120188/66‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTA > 1:5445223/1‑68 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:11763259/67‑1 ATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC > 1:32668881/1‑68 ATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC > 1:22353038/1‑68 ATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC > 1:6115012/1‑68 ATAAAACGCACCAACAACGCTTCAGGCTCGTAGCCCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC > 1:24067613/1‑68 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:7347315/1‑68 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:51147/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC < 1:14157574/67‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC < 1:21838819/67‑1 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:3527295/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:13370629/1‑67 ACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATACGACT > 1:1796323/1‑67 ACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCA > 1:332338/1‑68 GCCTTATCCGACTTGTCGGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:34872047/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGCGCCTGA > 1:699842/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:26335916/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:3882301/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:11134053/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:30299766/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:31664388/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:34781240/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:33016745/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:10139453/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:1307789/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:6026696/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:16893880/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:10642288/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:20648175/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:18363272/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:20049145/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:19344654/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTG > 1:6064010/1‑67 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:23574893/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:31812234/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:17228834/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:18465692/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:6594751/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:25218256/1‑68 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:35402707/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:26693034/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:31278978/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA < 1:25791548/66‑1 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA < 1:14250259/66‑1 TTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGC < 1:121913/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:7614235/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:3699459/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:15778268/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:15056853/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:19896910/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:21932240/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT > 1:27316143/1‑68 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:25616855/68‑1 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:18916803/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:6709009/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:17781190/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:30896472/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:22952893/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:10908230/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:11932369/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:10359638/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:9088266/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:29154474/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:29221822/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCCACGAGCCTGAAGCGTTG > 1:8330694/1‑68 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGT < 1:14534325/68‑1 GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTT < 1:8670382/68‑1 GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTT > 1:2127924/1‑68 ACTTGTCAGTCGGATAAGGTTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:33970305/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:17065754/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:21957688/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:18724718/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:1915615/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:36447180/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:27087848/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:27805088/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:28328704/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG > 1:24460777/1‑68 TTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT > 1:29826963/1‑68 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |