| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 4 (0.010) | 4/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 1091 total aligned reads displayed.
AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTG > CP009273/3729614‑3729748 | aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:20195472/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:12755740/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGACTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:20766524/1‑68 (MQ=255) aCCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACa < 1:8046323/67‑1 (MQ=255) aCCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACa < 1:27623240/67‑1 (MQ=255) aCCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAa < 1:14528019‑M2/68‑2 (MQ=255) ccAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAag > 1:24001510‑M2/1‑66 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:6641018‑M2/1‑65 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:14789098‑M2/1‑65 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:30128473‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:29154474‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:30896472‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:14003622‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:10908230‑M2/1‑62 (MQ=255) aacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga > 1:6103006‑M2/1‑61 (MQ=255) acGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggat > 1:4986241‑M2/1‑60 (MQ=255) cGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGGCTggtcagtcggata > 1:22656958‑M1/1‑55 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:23574893‑M2/1‑56 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:16049505‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:4737250‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:26335916‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:25864674‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:22845917‑M2/1‑55 (MQ=255) ggCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCa > 1:16746951/1‑68 (MQ=255) gCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCaa > 1:29453567/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg > 1:20605044/1‑68 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt > 1:14374815/1‑68 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt < 1:36360506/68‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt > 1:33419505/1‑68 (MQ=255) taaaCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:8521747/66‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:10328445/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:28438262/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:13249955/68‑1 (MQ=255) aaCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAt > 1:32237753/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:17294653/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:17212936/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:32610698/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt < 1:23157005/68‑1 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:36928882/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCCACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:6961769/1‑68 (MQ=255) cTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTa < 1:4509043/68‑1 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:18819225/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:7364875/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:27970622/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:35994958/1‑67 (MQ=255) aCAAAGAAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAAGCAATTACATATgcg > 1:10006161/1‑67 (MQ=255) cataGTATAAATACTTATCCTACTGAGATCGCGGATAAGGCTGAAGGAAATGCAATTACATATTcgcc < 1:34720214/65‑1 (MQ=255) aaGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGcgccgc < 1:24959949/68‑1 (MQ=255) gTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa > 1:6405320/1‑68 (MQ=255) aaaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa < 1:27308281/66‑1 (MQ=255) aaaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGAt < 1:25257339/67‑1 (MQ=255) aaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGAGCCGCGATTa > 1:12290689/1‑67 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:19124802/68‑1 (MQ=255) gCCTTATCCGACTtgtcggtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:34872047‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:35584925‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:26550973‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:17827721‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:7658163‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:18389189‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:10642288‑M1/1‑13 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:15647870/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:33975494/1‑68 (MQ=255) ttATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGGAATTACATATGCGCCGCGATTAACCGTTg < 1:2140267/68‑1 (MQ=255) ttATCCGACTGACAAGTCGGAT‑AGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:12134386/68‑1 (MQ=255) tATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcg < 1:18970906‑M1/68‑60 (MQ=255) tATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:18610361/68‑1 (MQ=255) tATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:34465396/68‑1 (MQ=255) aTCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgt > 1:15233299‑M1/1‑8 (MQ=255) tCCGAGTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgtt > 1:9517923‑M1/1‑7 (MQ=255) tCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgtt > 1:31643898‑M1/1‑7 (MQ=255) tCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgtt < 1:19896910‑M1/68‑62 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:3293984‑M1/1‑6 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagccacgagcctgaagcgttg > 1:8330694‑M1/1‑6 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:11305330/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa < 1:4066039/68‑1 (MQ=255) gACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgtt > 1:33806624‑M1/1‑4 (MQ=255) gACTGACAAGTCGGATAAGGCTGAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:19313831/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGTAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:21774676/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAATTGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:11832729/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:2111504/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:35118253/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:8810422/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:22259544/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:25657070/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:5754487/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:529185/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:17021308/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:29794675/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:31374585/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:3182506/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:13453991/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGATCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:26916245/68‑1 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:27087848‑M1/1‑3 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:18062613‑M1/1‑3 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:21957688‑M1/1‑3 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:9089139‑M1/1‑3 (MQ=255) cTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttgg > 1:24460777‑M1/1‑2 (MQ=255) cTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCt < 1:16466264/68‑1 (MQ=255) cTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCt < 1:30488246/68‑1 (MQ=255) cTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCt < 1:3824290/68‑1 (MQ=255) | AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTG > CP009273/3729614‑3729748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |