| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4388394 = | 381 (0.860) | 19 (0.050) | 8/100 | NT | 5.5% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 317 (0.800) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4388466‑4388394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388416‑4388482 GCGGGCGTTTGCAATAGCGGGCGATACACTTCACCTTGCTGTTTCTGGTTGCCTGGCTGCGCATTCGG < 1:11705183/68‑1GCGGGCGTTTGCAAAAGCTGGCGATCCACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:34646040/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:22093418/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:25180194/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:26143197/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:15238579/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:31710717/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:3563516/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:1303492/68‑1GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGG < 1:12834570/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:14596795/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:32376017/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:30916895/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCC < 1:7612700/68‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:4550149/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:3081924/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:28599820/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:28297105/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:5850574/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:23754796/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:2239532/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:976143/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:1614581/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:11921910/67‑1 GGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGC < 1:14055520/67‑1 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:30358254/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:6153503/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:36356642/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:19250479/1‑68 CGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG > 1:36249794/1‑68 GTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:34362010/67‑1 GTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG < 1:16819626/67‑1 TGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTAC < 1:2113203/68‑1 TGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTAC < 1:9487982/68‑1 TGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTAC < 1:22628304/68‑1 AAGCTGGCGATACACTTCACCTTGCTGGTGCTGGTAGCCTGGCGGCGCATTCGGCCAGGCTACCAGAA < 1:23844942/68‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAG < 1:14104915/68‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:21189001/67‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:35983323/67‑1 TGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:19432173/67‑1 TGGCGAAACACTTCACCTTGCTGTTTCTGGTAGCCTCGCTGCGCATTCGGCCAGGCTACCAGAAACA < 1:3481349/67‑1 GGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:19818042/68‑1 GGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:147166/68‑1 GGCGATACACTTCACCTTGCGGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGC < 1:16165944/68‑1 GATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAA < 1:15201666/67‑1 ATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGG < 1:32851576/68‑1 TACCCTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGG < 1:21252811/67‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCGAGGT < 1:7765926/68‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGT < 1:21223186/68‑1 TACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGT < 1:21128436/68‑1 CACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGA < 1:7896227/68‑1 CACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGCCCAGGCTACCAGAAACAGCAAGGTGA < 1:28656314/68‑1 CACTTCACCTTGCTGTTTCAGGCAGCCTGGCTGCGCATTCGGCCAGGCTACCAGAAACAGCAAGGTGA < 1:31734677/68‑1 taCACCTTGCTGTTTCTGGGCGCCGGGCGGCGCATGCGGCCAGGCGACCAGAAACAGCAAGGTGAAGT < 1:2992086/66‑1 GCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAA > 1:12600550/1‑68 GCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAA > 1:6691603/1‑68 CCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAA > 1:3239413/1‑68 CAGGCTACCAGTAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA > 1:24941460/1‑68 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:28994991/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:3701948/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:4833547/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:12536002/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA > 1:24312951/1‑68 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA > 1:8172053/1‑68 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA < 1:30049085/68‑1 CAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAA > 1:1014765/1‑68 GCTACCAGAAACAGCAAGGTGATGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGCTGCAAAAATTA > 1:29419711/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCTAACGCCCGCGCCGATGCAAAAATTA > 1:29987423/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:27642118/1‑68 GCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > 1:197852/1‑68 GCGGGCGTTTGCAAAAGCTGGCGATACACTTCACCTTGCTGTTTCTGGTAGCCTGGCTGCGCATTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4388466‑4388394‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACGCCCGCGCCGATGCAAAAATTA > CP009273/4388416‑4388482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |