| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4388394 = | 381 (0.860) | 19 (0.050) | 8/100 | NT | 5.5% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 317 (0.800) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
Only 100 of 461 total aligned reads displayed.
CAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACG > CP009273/4388328‑4388461 | tttttgcatcggcgcgggcgtttgcaaaagctggcgatacacttcaccttgctgtttctggtagCCTg > 1:24312951‑M1/65‑68 (MQ=255) tttttgcatcggcgcgggcgtttgcaaaagctggcgatacacttcaccttgctgtttctggtagCCTg < 1:3701948‑M1/4‑1 (MQ=255) tttttgcatcggcgcgggcgtttgcaaaagctggcgatacacttcaccttgctgtttctggtagCCTg < 1:30049085‑M1/4‑1 (MQ=255) ttttgcatcggcgcgggcgtttgcaaaagctggcgatacacttcaccttgctgtttctggtagCCTgg > 1:3239413‑M1/64‑68 (MQ=255) tCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCt < 1:35158420/65‑1 (MQ=255) tCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTgg < 1:16856208/67‑1 (MQ=255) aGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAAt > 1:2082198/1‑68 (MQ=255) gCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAAt > 1:531090/1‑67 (MQ=255) ccGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATgc > 1:28465462/1‑68 (MQ=255) ggTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATgcgc > 1:10594215/1‑68 (MQ=255) gTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCa > 1:32804225/1‑68 (MQ=255) tAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCa < 1:8963150/67‑1 (MQ=255) tAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCa > 1:33103426/1‑67 (MQ=255) aGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAg > 1:2040576/1‑67 (MQ=255) aGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAg < 1:20165146/67‑1 (MQ=255) aGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGc < 1:16176538/68‑1 (MQ=255) tCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGcc < 1:21867226/66‑1 (MQ=255) tCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGcc < 1:32878798/66‑1 (MQ=255) ccGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAgg < 1:17911051/68‑1 (MQ=255) gcgcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCt < 1:30386398/68‑1 (MQ=255) gcgcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCt < 1:26510223/68‑1 (MQ=255) gcgcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCt < 1:33652249/68‑1 (MQ=255) gcgcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCt < 1:3951947/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTa > 1:12356805/1‑67 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTa > 1:31160730/1‑67 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:32601740/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:10919854/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:11844459/68‑1 (MQ=255) gcTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAc < 1:23203531/68‑1 (MQ=255) cTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTAcc > 1:18816992/1‑68 (MQ=255) cTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGCCTAcc > 1:27952732/1‑68 (MQ=255) acacacCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAg < 1:3664247/68‑1 (MQ=255) acacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAg > 1:12987535/1‑68 (MQ=255) cacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCata < 1:6672123/68‑3 (MQ=255) cacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGa < 1:23598857/68‑1 (MQ=255) cacTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGa < 1:25756542/68‑1 (MQ=255) acTCCTGCGTCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:22148244/1‑68 (MQ=255) acTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:30867109/1‑68 (MQ=255) cTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:27578330/1‑67 (MQ=255) cTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGaa > 1:25375284/1‑67 (MQ=255) cTCCTGCGCCAGCATCAGGCAGACGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCTCGCTACCAGaa > 1:4794425/1‑67 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGGTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:35875258/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCCGCCAGGCTACCAGCAACa > 1:6475649/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:29879948/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:28650797/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:26239165/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:31501589/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:22303528/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa > 1:35484309/1‑68 (MQ=255) ccTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACa < 1:8185824/68‑1 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:3839683/1‑68 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:9529609/1‑68 (MQ=255) tGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGc > 1:28240662/1‑68 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCaa < 1:26916581/67‑1 (MQ=255) gcCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAg > 1:19940615/1‑68 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:23930675/67‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:29066916/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:8635075/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:28920087/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGt < 1:24901533/68‑1 (MQ=255) cAGCATCAGGCAGTCGTCCGGCTGCACCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg < 1:33846568/67‑1 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:18409911/66‑1 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:34032542/66‑1 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGa < 1:32143281/66‑1 (MQ=255) aTCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAg > 1:36327720/1‑68 (MQ=255) tcaccttgctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTGCCTGAAACAGCAAGGTGAAgtg < 1:31734677‑M1/47‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:20221819/68‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:9290817/68‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:8058893/68‑1 (MQ=255) cAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:10130947/68‑1 (MQ=255) cAGGCAGTCGGCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAgtg < 1:7633499/68‑1 (MQ=255) cAGGCAGTCGGCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGGGAAgtg < 1:21384499/68‑1 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:1352066/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:16620824/1‑67 (MQ=255) gCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTa > 1:27045300/1‑67 (MQ=255) cAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATc > 1:17471737/1‑68 (MQ=255) cAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATc > 1:22778538/1‑68 (MQ=255) aGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGCGACAGCAAGGTGAAGTGTATc > 1:12557882/1‑67 (MQ=255) gtcgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCg > 1:5995314/1‑67 (MQ=255) gtcgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGGGTAGCg > 1:13930063/1‑67 (MQ=255) gctgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGcc < 1:147166‑M1/54‑1 (MQ=255) cgtcCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa > 1:11332734/1‑68 (MQ=255) tgtttctggtagCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCa < 1:21189001‑M1/55‑1 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCCGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCt > 1:29463740/1‑68 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGc < 1:15375485/67‑1 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGc < 1:4620430/67‑1 (MQ=255) ccGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCt < 1:19566753/68‑1 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAACCCGCAAGGTGAAGTGTATCGCCAGCttt > 1:4392996/1‑68 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAgg > 1:3463478/1‑48 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:15631855/1‑68 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:7338463/1‑68 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:1276120/1‑68 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:36466351/1‑68 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:30622079/1‑68 (MQ=255) ggCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCttt > 1:25155878/1‑68 (MQ=255) gCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCtttt > 1:10311048/1‑68 (MQ=255) ccccTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCaa > 1:17195818/1‑67 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAAc < 1:34362010‑M1/67‑1 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:6153503‑M1/1‑68 (MQ=255) CCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACg > 1:19250479‑M1/1‑68 (MQ=255) | CAGCTCGTGAGCCGGTAGCTCCGCGCTACACTCCTGCGCCAGCATCAGGCAGTCGTCCGGCTGCCCCCTGGCCGAATGCGCAGCCAGGCTACCAGAAACAGCAAGGTGAAGTGTATCGCCAGCTTTTGCAAACG > CP009273/4388328‑4388461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |