| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 326 (0.730) | 18 (0.050) | 6/88 | NT | 6.3% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 282 (0.810) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 189 total aligned reads displayed.
AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 AATAATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCT < 1:34919505/68‑1 TCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGT > 1:16705090/1‑68 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:1567113/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:16073495/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:11168419/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:32124649/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:3446471/68‑1 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:10640043/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:14886074/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:14564917/1‑68 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCC > 1:36210138/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTTTCAGCCG > 1:35987462/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:3050869/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:6303994/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:22897725/1‑67 CCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC > 1:20609839/1‑67 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:22299571/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:28830320/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:10359627/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:2926038/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:24763982/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:23514808/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:24146733/66‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:7120949/66‑1 TCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGGCGTAGAATGCCCGCTAGGGCGGCTGCCAGAGT > 1:12993064/1‑68 TCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGT > 1:26716954/1‑68 TCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGT > 1:7191516/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAA > 1:22941242/1‑68 TACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTTAAAC > 1:26116284/1‑68 TACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAAC > 1:36900443/1‑68 ACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACG > 1:35576771/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGACTGCCCGCCAGGGCGGCGGACAGAGGAACACGT > 1:10149463/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:20536890/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:4587786/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGga > 1:18670976/1‑66 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:21433533/1‑68 ACTCTGTCAGCCGCCCGATTGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGA > 1:4128877/1‑68 ACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGA > 1:12645416/1‑68 TCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:12658161/1‑68 TCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:23262809/1‑68 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:29319491/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:28218136/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:6656332/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:6697422/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:8193362/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:9344082/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:23827031/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:10249807/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:21474923/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:15623224/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:12850721/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:19239972/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:34286849/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:33886664/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:2564003/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:26068517/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:19012247/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:8560507/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:11756744/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:13663873/1‑65 TCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:35070189/1‑64 TCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:27882312/1‑64 CAGCCGCCCGAATGGACGTAGACTCCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:2489550/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:11470018/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT > 1:8786261/1‑68 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT > 1:23049503/1‑68 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT > 1:16978102/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCTAGGGCGGCTGACAGAGTAAATGGTAATGGAGGACTGTGG > 1:18257662/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:11857733/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:1347614/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:15325156/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:4487645/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:4396293/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:9732517/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:15978949/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:17801339/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:22571642/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTACGGGATGACTGTGGT > 1:30212886/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:16275834/1‑68 CGCCCGAATGGACGTAGAATGCCCGCAATGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:9901576/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:384425/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:20756520/67‑1 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:3987476/1‑68 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGTTGCGAT < 1:23142043/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:30743293/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:18275036/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:5012674/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:5293966/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:537966/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:29665807/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:29661959/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:19232229/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:1969123/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:20089005/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:27463461/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:32954402/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:21358933/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:10689014/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:34062249/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:17524585/68‑1 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |