| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 326 (0.730) | 18 (0.050) | 6/88 | NT | 6.3% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 282 (0.810) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 701 total aligned reads displayed.
CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 | ttGGTTTCAATTTTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTg < 1:30472038/68‑1 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:34413252/1‑68 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGACCTTGCg > 1:19159024/1‑68 (MQ=255) ttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCggg < 1:7086002/67‑1 (MQ=255) tCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCa < 1:24891852/68‑1 (MQ=255) cAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt < 1:26217616/68‑1 (MQ=255) ctgcaaagcctgcgtgaaaggaacgtttgaaacggcttaaacggtTGTCAGCCGCCCTTGCGGGCAtt > 1:10000510‑M1/46‑68 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:837985/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:20588304/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:3830108/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:30171801/68‑1 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:12885161/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTc < 1:35257654/68‑1 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:35393689/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:33911206/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:3232051/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:21592713/1‑68 (MQ=255) ttatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTAc < 1:22121384/68‑1 (MQ=255) atGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACg > 1:13963935/1‑67 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:28099352/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:31825368/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:16865326/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:26070610/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:7488262/68‑1 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:6269074‑M2/68‑2 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:32954402‑M2/68‑2 (MQ=255) aTCGCACCACACACATCCATAACGTTTTACTCTGTCAGCCGCCCTAGCGGGCATTCAACGTCCATACg > 1:15243454/1‑68 (MQ=255) ccccaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGggcggc < 1:15781080/65‑1 (MQ=255) ccccaGTCAACCATTACCTTCTACTCGGGCCGCCGCCCTTGCGGGCATTCTCCGTCCATGCGggcggc < 1:29708182/65‑1 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:31226747‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:15542560‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:12292611‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:11857733‑M2/1‑61 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:10249807‑M2/68‑13 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:6697422‑M2/68‑13 (MQ=255) ttgaaacggcttaaacggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa < 1:20992676‑M1/48‑1 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacaga > 1:12658161‑M2/1‑54 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctga > 1:27882312‑M2/1‑54 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa > 1:30845610/1‑67 (MQ=255) tgaaacggcttaaacggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTgacagag < 1:13331131‑M1/50‑4 (MQ=255) aTCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGGCCATTCGGGCGGCTGACAAcc < 1:18075427/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagt > 1:16637371‑M2/1‑52 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg > 1:18794942/1‑68 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg > 1:12984316/1‑68 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAATCTACGTCCATTCGGGCGGCTGACAACCg < 1:29607751/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:16281991/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:17651976/1‑68 (MQ=255) aCGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacg > 1:4587786‑M2/1‑46 (MQ=255) cGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggcgggcagagtaaaacgg > 1:4212163‑M1/1‑22 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:34109258/1‑67 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:20417862/1‑67 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:34892440/1‑67 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:4819506/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:9729077/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTGGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:18365089/1‑68 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaat > 1:23037604‑M2/1‑42 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:15043347/68‑1 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:2692622/68‑1 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:19766934/68‑1 (MQ=255) ttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGtt < 1:9357752/68‑1 (MQ=255) acggtTGTCAGCCGCCCTTGCGGGCATTCTCCGTCCGTTCGGGGGGCTGCCAACCGTGTACGCCgtg < 1:8631396‑M1/62‑2 (MQ=255) acggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACACCCGTTTAAGCCGtt < 1:6887184‑M1/62‑1 (MQ=255) aCTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtattgga > 1:2941813‑M1/1‑16 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:5755504/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:17338330/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:2137803/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:33769728/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:33281401/1‑68 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa > 1:10475097/1‑68 (MQ=255) tctGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatg > 1:23262809‑M1/1‑14 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:22921299/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:11702775/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:27555782/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:3646360/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:19016377/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:896630/1‑68 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:8193362‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:7863952‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:2401574‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:19277764‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatg > 1:11421844‑M1/1‑12 (MQ=255) gTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgact < 1:2564003‑M1/68‑58 (MQ=255) gTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgact < 1:4474776‑M1/68‑58 (MQ=255) GTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACg < 1:23651746‑M1/68‑1 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt > 1:36107791‑M1/1‑9 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt > 1:3938799‑M1/1‑67 (MQ=255) AGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGtt < 1:29283553‑M1/67‑1 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:35718927‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:30701504‑M1/1‑7 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTcc > 1:27169417‑M1/1‑66 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:24311597‑M1/1‑67 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:35007470‑M1/67‑1 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:28498355‑M1/67‑1 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:16054285‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:5293966‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:21454632‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:22369447‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:22648186‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:25219511‑M1/68‑68 (MQ=255) CTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAc > 1:13501724‑M1/1‑68 (MQ=255) | CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |