| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 8 (0.020) | 6/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 108 total aligned reads displayed.
GTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/173385‑173463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC < CP009273/173466‑173400 GTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCA < 1:24385044/68‑1GTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCA < 1:5162147/68‑1 ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:30362056/1‑68 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:22296772/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:26073317/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:35738812/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:22252518/1‑67 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:32237626/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:27445453/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:27662675/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:28512775/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:24205066/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:19705231/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:10624375/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:11175574/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:22172922/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:36022847/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:24055054/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:22518906/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:4475803/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:7639626/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:11493682/68‑1 CCCGAGCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:19797443/68‑1 CCCGAACGCGAACAGCACCTGCGGGTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:15512951/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:26941703/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:24984358/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:27516345/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:10258232/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:2983284/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:31061627/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:3861728/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:22951078/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:4023244/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:9045446/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:9368329/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:9690402/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:10191880/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:13675715/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:17090846/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:10310533/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:20397794/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:33544813/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA > 1:8219032/1‑68 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:27108512/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA > 1:19254724/1‑68 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:15513691/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:18855350/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:29861169/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:5037520/68‑1 TCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAGCAGCAGATTAGAT > 1:25094722/1‑68 CCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATGCGGCACATGAACAAGAGATTAGAT > 1:28771836/1‑67 CCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGAT > 1:33364093/1‑67 CTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGAT > 1:24760900/1‑66 CTTTAGTATCTAATCTGTTGTTCATGTGCCGGAGAGGTTATCCGGCACATGAACAACAGATTAGAT > 1:34400042/1‑66 TAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAA > 1:16441385/1‑68 ATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAA > 1:6419873/1‑67 TCATGTGCCGGTTAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGC > 1:12354572/1‑68 ATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGATGAACCGCAACCGCAG > 1:23893623/1‑68 ATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAG > 1:15230286/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGCACCGCAACCGCAGG > 1:22273538/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:1296603/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:12717258/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:30877464/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:7683762/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:11114814/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:13837341/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:9448504/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:23048854/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:19304215/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG < 1:25813273/68‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:17725879/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:2677762/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:17444062/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCA < 1:2150753/66‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCA < 1:9453389/66‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCA < 1:31347280/66‑1 GTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT < 1:12081977/68‑1 TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:29541715/1‑67 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTG < 1:8684885/67‑1 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:4435499/1‑66 CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT > 1:34031326/1‑68 CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT > 1:11128713/1‑68 CGGATAGTTTATGCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT > 1:24034774/1‑68 CGGATAGTTTATCCTGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT < 1:3524452/67‑1 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT > 1:35484836/1‑68 ATAGTTTATCCGGCACATGCACAACAGATTAGATACTAAAGGAAGAACCGCACCCGCAGGTGCTTTTC > 1:8845581/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCTGGTGCTTTTC > 1:29328528/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:15329900/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:9552750/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:14649527/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:31311531/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:23588961/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:20196189/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:11728317/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:4917818/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:29204539/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:3038894/1‑68 AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC < 1:29263489/68‑1 AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC > 1:25404741/1‑68 AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC > 1:1668724/1‑68 GTGACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/173385‑173463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC < CP009273/173466‑173400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |