| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 8 (0.020) | 6/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 476 total aligned reads displayed.
ACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173398‑173530 | aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa < 1:1136749/67‑1 (MQ=255)aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa < 1:33965947/67‑1 (MQ=255) cgcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa > 1:10714697/1‑66 (MQ=255) cgcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa > 1:1571010/1‑66 (MQ=255) cccgAAAAGCACCTGCGGTTGCGGTTCTTCATTTAGTATCTAATCAGTTGTTCATGTGCCGGATaa > 1:26430602/3‑66 (MQ=255) gcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACt < 1:29263489‑M2/68‑2 (MQ=255) gAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtat > 1:31311531‑M2/1‑65 (MQ=255) gAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtat > 1:4917818‑M2/1‑65 (MQ=255) gAAAAGCACCTGCGGGTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTGCATGTGCCGGATAAACtat > 1:8845581‑M2/1‑65 (MQ=255) gAAAAGCACCAGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtat > 1:29328528‑M2/1‑65 (MQ=255) aaGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGCATAAACtatccg > 1:24034774‑M2/1‑62 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:17725879‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:17444062‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:11114814‑M2/1‑57 (MQ=255) gcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtaaccggcacatga > 1:12354572‑M2/1‑54 (MQ=255) gcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtct < 1:33658323/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:29679101/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:16527992/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:14920964/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:10989996/68‑1 (MQ=255) ttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGACGGATAAACTATCCGGCACAtcttc > 1:27575433/1‑66 (MQ=255) gcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctctc < 1:26849345/68‑1 (MQ=255) ggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTctctct < 1:25126942/67‑1 (MQ=255) ggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTctctct < 1:20125284/67‑1 (MQ=255) ttcttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCa > 1:10517987/1‑68 (MQ=255) ttcCTTTAGTTTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:27422103/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAACCTATCCGGCACATCTTCTCTCTTCAACg < 1:35875456/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:9581929/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:36390768/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:4500825/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:8707141/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:13087261/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:18142105/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:19156646/68‑1 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGCTAAACtatccggcacatgaacaacagattagat > 1:13452848‑M2/1‑40 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGc < 1:14157756/68‑1 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGAGAggttatccggcacatgaacaacagattagat > 1:34400042‑M1/1‑35 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:19974881/1‑68 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt < 1:21798691/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:19574003/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:7065304/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:6632712/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:3783855/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:33175335/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:26160121/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:24842997/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:22346835/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:11625448/1‑67 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:36487374/1‑67 (MQ=255) tAGTATCCAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:9305178/68‑1 (MQ=255) gTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtc > 1:23118359/1‑67 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacatgaacaacagattagatactaaagg > 1:33364093‑M2/1‑31 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCa > 1:18374698/1‑68 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCAGGCACATCTTCTCTCTTCCCCGCACATTCTCa > 1:1342007/1‑68 (MQ=255) aTCTAATCTCTTGTTCATGTGCCGCATAAACtatccggcacatgaacaacagattagatactaaagg > 1:28771836‑M2/1‑31 (MQ=255) aaTCTGTTGTTCATGGGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa < 1:22753208/68‑1 (MQ=255) aTCTGTTGTTCATGTGCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaa > 1:6419873‑M1/1‑23 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:31040983/1‑67 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:18742439/1‑68 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc < 1:34946121/68‑1 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:6952408/1‑68 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:17871727/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:32324779/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:7677601/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:206682/1‑67 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:5994635/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:24578662/1‑68 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCTTCCAGCGCaa > 1:17309413/1‑67 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:36181478/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCCTTCTCATCCAGCGCAAACg > 1:32939812/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGt < 1:30047685/68‑1 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGt < 1:28426474/68‑1 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCAAGCGCAAACg > 1:31652434/1‑67 (MQ=255) aTGTGCCGGATAgtttatccggcacatgaacaacagattagatactaaaggatgaaccgcaaccgcag > 1:23893623‑M1/1‑12 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:24967147/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:7923920/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:3531268/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:16740927/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:23414606/1‑68 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagcaccgcaaccgcagg > 1:22273538‑M1/1‑11 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg < 1:25813273‑M1/68‑58 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:1296603‑M1/1‑11 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:13837341‑M1/1‑11 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgca < 1:2150753‑M1/66‑56 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgca < 1:9453389‑M1/66‑56 (MQ=255) gtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggt < 1:12081977‑M1/68‑59 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAATCGTCGGTa > 1:21112771/1‑68 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:3066172/1‑68 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCGATTCTCATCCAGCGCAAACGTCGGTAg < 1:35089036/68‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:12603887/68‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:5241715/68‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:31978594/68‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:3682210/68‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:4184556/67‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:11757371/67‑1 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttc > 1:23588961‑M1/1‑3 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttc > 1:3038894‑M1/1‑3 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttc > 1:14649527‑M1/1‑3 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttc > 1:15329900‑M1/1‑3 (MQ=255) agtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttcgc > 1:25404741‑M1/1‑1 (MQ=255) | ACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173398‑173530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |