| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 438477 | NA (NA) | 7 (0.020) | 3/88 | NT | NA | noncoding (4/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 438479 | NA (NA) | noncoding (6/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 120 total aligned reads displayed.
CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438401‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:8585069/1‑68CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:36735985/1‑68CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:27413165/1‑68CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTAC < 1:25082171/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:23845499/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:20239710/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:20191545/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:20387409/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:36801461/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:21036075/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:5835621/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:665819/1‑67 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:27266711/67‑1 CTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTC > 1:8180434/1‑68 TCTATCTGCGCGAGCAGGGCTTTAACAATGTTAACGTATATCGCCCGTAATTTGTGGTTTTTACGac > 1:4185364/1‑65 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:29057419/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:9744816/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:32110332/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:32810599/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:32860804/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:33864516/1‑68 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:35706582/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:26976007/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:26142289/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:25697147/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:3737990/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:7197513/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:17834998/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:14207300/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:16500363/68‑1 ATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:3766061/1‑67 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:25965858/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:23991743/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:7112613/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:1622249/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:2271587/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:31276561/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:4914150/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:4260173/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:33527522/1‑66 CTGCGCTATCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTTATTTGTGGTTTTTACGTCGCATCT < 1:36568852/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:8445845/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:25422667/1‑65 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGGAATTTGTGGTTTTTACGTCGCA > 1:14781956/1‑65 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:5225518/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:26467889/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:20024571/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:19532675/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:16240348/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:15240904/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:24660707/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:16004994/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:23964179/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:15943360/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:23888296/1‑68 CGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGA > 1:26138248/1‑67 GAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGGCGTTAAAACCACAA > 1:1858320/1‑68 GTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATT > 1:18056072/1‑67 CGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCG > 1:2809583/1‑68 CGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCG > 1:6141728/1‑68 ACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:20653980/1‑68 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:11495897/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:4771342/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:29832079/1‑67 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:9263414/1‑67 CGTCGCATCGGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:18492683/68‑1 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCTCTTTGTTAAAG > 1:25540188/1‑67 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC < 1:20455793/68‑1 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC < 1:10897873/68‑1 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC < 1:20498787/68‑1 TCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC > 1:15869695/1‑67 GCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCT < 1:17255077/68‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC < 1:8016212/68‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:21845277/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:4929531/67‑1 TCTGACCAGATGCGTCGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTTAAGCCCTGC > 1:10816883/1‑67 TCTGACCAGATGCGCCGTAAAAGCCACAAATTACGGGCGATATACCGTCTCATTGTTAACGCCCTGC > 1:36987826/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGGGATATACCTTCACATTGTTACCGCCCTGC > 1:20421215/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:34198004/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:30905609/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACA > 1:5555338/1‑52 TGAGCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:33757466/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:24358152/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:2622194/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:26289254/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:8395248/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:12255466/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:10142776/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:21870903/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:30016969/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:5696677/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:31002304/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:22200513/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:4756589/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:4514823/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:32724851/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:17740917/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTC > 1:7364219/1‑67 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATAAACCTTCACATTGTTAAAGCCCTGCTgg < 1:34259913/68‑3 GACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:13892890/67‑1 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438401‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |