| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 699831 = | 358 (0.800) | 33 (0.090) | 11/96 | NT | 10.9% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 234 (0.610) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
Only 100 of 121 total aligned reads displayed.
AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/699903‑699831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC > CP009273/699861‑699927 AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATG > 1:14440984/1‑67 AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:26476165/1‑68 AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:4830230/1‑68 AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:20995804/1‑68 cACGATCCACGCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:23327101/67‑1 AACGCTCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:26378565/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGGGGCCAGACGTAACCAAAAATGGCCG < 1:22991464/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAACTGGCCG < 1:10677797/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:5821610/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:7472507/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:2924828/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:22801239/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:7109891/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:28102791/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:19140390/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:26948805/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:26798533/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:22299066/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:3137826/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:26763952/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:21684014/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:14949938/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:10092094/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:23431469/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:33615984/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:12276151/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:13266101/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:32708769/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:30160563/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:15224152/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:7672556/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:15903871/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:16435769/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:32671120/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:16975956/68‑1 AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:4923125/1‑67 AACGATCCACTCGCCGCCTGCATGGAGAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC > 1:26107511/1‑67 AACGATCCACTCGCCGCCTGCATGGAAAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG < 1:28151437/68‑1 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGC < 1:2236066/68‑1 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:14716074/1‑67 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:13246991/1‑67 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:4411380/1‑67 ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG > 1:25770429/1‑67 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:36535473/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:33388475/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:36870263/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:10042732/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:10162611/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:7208563/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:22994498/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:19713815/68‑1 CGATCCACTCGCCGCCTGCATGGATAGCCTGCTGTACCGGCGGCGAGACGTACCCAAAAATGGCCGCC < 1:30135445/68‑1 CGAGCCAATCGCCGCCGGCATGGATAGCGAGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC < 1:24915064/68‑1 TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT < 1:25486616/68‑1 TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGG < 1:25670233/67‑1 TCCACTCGCCGCCGGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT < 1:1815094/68‑1 TCCACTCGCCGCCGGCATGGATAGCGAGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT < 1:28097938/68‑1 TCCACTCGCCCCCTGCATGGATAGCGTGCGGTCCCGGCGGCCAGACGTAACCAAAAAAGGCCGCCGGT < 1:9370483/68‑1 CGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:8819778/68‑1 CGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:10891347/68‑1 CGCCGCCTGCATGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGCCCGCCGGTACAGCA < 1:4414173/68‑1 CGCCGCCTCCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:30736877/68‑1 CGCCCCCTGCATGGATAGCGTGCGGTACCGGCGGCCACACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:29240639/68‑1 CGCCCCCCGCCTGGATAGCGGGCGGTCCCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA < 1:4008947/68‑1 GCCGCCTGCATGGATCGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:24321117/68‑1 GCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:25247864/68‑1 GCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:592575/68‑1 GCCGCCTGCATGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC < 1:20579396/68‑1 CGCCTCCAGCGATACCGTGCTGTACCGCCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACG < 1:19532265/67‑1 GCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT < 1:29268907/68‑1 GCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT < 1:26510776/68‑1 GCCTGCAGGGATCGCGGGCGGTACCGGCGGCCAGACGTAACCAAAAAGGGCCGCCGGTACAGCACGCT < 1:25062685/68‑1 GCCTCCATGCATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT < 1:26673109/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT < 1:31378700/68‑1 CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGCCCGCCGGTACAGCACGCTAT < 1:17504414/68‑1 CTGCATGGATAGCGTGCGGTACCGGCGGCCAGACGTAACCAAAAATGCCCGCCGGTACAGCACGCTA < 1:27360954/67‑1 TGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGCCCGCCGGTACAGCACGCTATC < 1:3854580/68‑1 GCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTATCC < 1:17705893/68‑1 cagGGATAGCGGGCTGTCCCGGCGGCCAGACGTAACCAAAAAGGCCCGCCGGAACAGCACGCTATCCA < 1:1647900/65‑1 ATGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTATCCA < 1:22592571/67‑1 AGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTATCCATGCAGGC > 1:31774936/1‑68 cgGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGAACAGCACGCTATCCATGCAGGCGGCGA < 1:25644074/65‑1 GGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCC < 1:13416908/68‑1 GGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCC < 1:20632892/68‑1 CCGCCGGTACAGCACGCTATCCATGCAGGGGGCGAGTGGATCGTTTCTGCGGGGGCGCTGGGTTCCGG > 1:36070695/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:20572610/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:9763675/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:12999208/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:15382347/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:17769799/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:18061893/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:22599581/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:23994400/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:26982149/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:33056022/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG > 1:35162446/1‑68 CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCG < 1:4345523/67‑1 CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGT < 1:20815108/68‑1 GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA < 1:18652389/68‑1 CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC < 1:1859725/68‑1 AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/699903‑699831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC > CP009273/699861‑699927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |