| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 699831 = | 358 (0.800) | 33 (0.090) | 11/96 | NT | 10.9% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 234 (0.610) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
Only 100 of 451 total aligned reads displayed.
ACTTCCTGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCG > CP009273/699764‑699898 | gataccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccg < 1:1859725‑M1/1‑1 (MQ=255) ttCCTGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTggc > 1:20445267/1‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:22684768‑M1/64‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:23994400‑M1/64‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:12999208‑M1/64‑68 (MQ=255) ccggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccggcgg > 1:15382347‑M1/64‑68 (MQ=255) ggaacccagcgcgcccgcagaaacgatccactcgccgcctgcatggatagcgtgctgtaccGGCGGcc < 1:20632892‑M1/7‑1 (MQ=255) aGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAt > 1:4347504/1‑68 (MQ=255) aGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAt > 1:36543197/1‑68 (MQ=255) aGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAt > 1:16207137/1‑68 (MQ=255) gCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAtt > 1:6771413/1‑68 (MQ=255) gCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAt < 1:7792774/67‑1 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:23017643/1‑68 (MQ=255) cttcttCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCAttt > 1:24830289/1‑68 (MQ=255) cggcAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACg > 1:9707172/1‑68 (MQ=255) ggcAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTAct < 1:18225697/67‑2 (MQ=255) ggcAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACg < 1:12113010/67‑1 (MQ=255) ggcAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGt < 1:7153440/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:16775351/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:12764568/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:14705678/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:1637851/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:33352551/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:33139572/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:29014472/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:26982081/68‑1 (MQ=255) gCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGGGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:4869505/68‑1 (MQ=255) gCTTTGGGCCGATTGCCACCGGATTCTTCTGCCTGGGGCTGGCGGCCATTTTTGGTTACGTCTGgccg < 1:23688959/68‑1 (MQ=255) cTTTGTGCCGATTGCCAACGGATTCTTCTGCCTCGTGCTGGCGGGCATTTTTGGTTACGTCAGcccg > 1:8086170/1‑67 (MQ=255) tttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccgcc < 1:14107320/68‑1 (MQ=255) tttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccgcc < 1:22244804/68‑1 (MQ=255) tttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccgcc < 1:15992359/68‑1 (MQ=255) tttGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGgccgcc < 1:13286710/68‑1 (MQ=255) gtgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt < 1:8483179/68‑1 (MQ=255) gtgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt < 1:11116148/68‑1 (MQ=255) gtgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt < 1:28189983/68‑1 (MQ=255) gtgCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGt < 1:33568192/68‑1 (MQ=255) gCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTAc > 1:26535869/1‑68 (MQ=255) gCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTAc < 1:1795440/68‑1 (MQ=255) tcgccgcctgcatggatagcgtgctgttccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGtaccg < 1:25644074‑M1/37‑3 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:21888624/67‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:12255708/67‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:6306377/67‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCAc < 1:3126166/68‑1 (MQ=255) ttGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCAc < 1:6083276/68‑1 (MQ=255) ttGCCACCGGATTCAGCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCa < 1:30541962/67‑1 (MQ=255) tGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACg < 1:17163981/68‑1 (MQ=255) ccACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:15885095/68‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:22921119/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:18954310/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:19347017/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:31021872/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:29666787/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:27677285/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:7429336/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCt < 1:24548115/67‑1 (MQ=255) cACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTa < 1:3716304/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:23482911/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:36395993/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:19772316/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:35713925/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:35489835/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:32742419/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:3231515/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:8707895/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:9101130/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTAGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:14347501/68‑1 (MQ=255) aCCGGATTCTTCTGCCTGGTGCTGGCGGCCATTCTTGGTTACGTCTGGCCGCCGGTACAGCACGCTAt < 1:34694773/68‑1 (MQ=255) ccGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATc < 1:36817494/68‑1 (MQ=255) cGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATcc < 1:4610928/68‑1 (MQ=255) ggcttcttcTGCCTGGGGCTGGCGGCCATTTTTGGTTACGGCTGGCCGCCGGTACAGCACGCTATCCa < 1:31466813/65‑1 (MQ=255) ggATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCa < 1:34268384/68‑1 (MQ=255) tggatagcgtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCCCGCTATCCAt < 1:22592571‑M1/49‑1 (MQ=255) aTTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCAt > 1:21486041/1‑67 (MQ=255) ggatagcgtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGc < 1:17705893‑M1/51‑1 (MQ=255) atagcgtgctgtaccGGCGGGCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAg < 1:17504414‑M1/53‑1 (MQ=255) atagcgtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAg < 1:29243128‑M1/53‑1 (MQ=255) ttctGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAgg < 1:11447922/68‑1 (MQ=255) ttctGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAgg < 1:5738634/68‑1 (MQ=255) tctGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAggc < 1:29970995/68‑1 (MQ=255) tctGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAggc > 1:20094219/1‑68 (MQ=255) agcgtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATGCATGGAggc < 1:26673109‑M1/55‑1 (MQ=255) cgtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGGCGGTACAGCACGGTATCGCTGGAggcg < 1:19532265‑M1/56‑1 (MQ=255) gtgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCCCGCTATCCATGCAggcggc < 1:25128191‑M1/58‑1 (MQ=255) gCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAggcggc > 1:33996377/1‑68 (MQ=255) tgctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGGACCGCCCGCTATCCAGGCGGggggcg < 1:4008947‑M1/59‑1 (MQ=255) gctgtaccGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCCCGCTTTCCATGCAGGCGGCGa < 1:35409365‑M1/60‑1 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:27315057/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:26106572/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:25828025/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:25309533/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa > 1:21119626/1‑68 (MQ=255) cTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGa < 1:30814054/68‑1 (MQ=255) tGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAg < 1:23816448/68‑1 (MQ=255) ggTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGt > 1:13787033/1‑68 (MQ=255) gCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa > 1:20816360/1‑68 (MQ=255) gCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGa > 1:18001499/1‑68 (MQ=255) accGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCTCGCTATCCATGCCGGCGGCGAGTGGa < 1:28097938‑M1/65‑1 (MQ=255) GGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCg < 1:10042732‑M1/68‑1 (MQ=255) GGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCg < 1:10899728‑M1/68‑1 (MQ=255) | ACTTCCTGAGCTTCTTCGGCGGCAAACGCTTTGTGCCGATTGCCACCGGATTCTTCTGCCTGGTGCTGGCGGCCATTTTTGGTTACGTCTGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCG > CP009273/699764‑699898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |