| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 964816 = | 148 (0.330) | 13 (0.030) | 6/94 | NT | 7.9% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 178 (0.480) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964887‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 tAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:27180663/66‑1GAATATTTCGCGCATCAGCAAGGGTGAGGTGCGGCAGCGACATTCATGACTCCTTGAATCGAACGCT < 1:28372659/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTG < 1:13041469/68‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTG < 1:13704796/68‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:10948670/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT > 1:9329875/1‑67GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT > 1:8630325/1‑67GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:6463254/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:5537760/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:33443564/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:3317667/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:30637728/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:23636250/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:20062689/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT > 1:19729563/1‑67GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:10237640/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:11367953/67‑1GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:14483253/67‑1 agcTTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:8699347/4‑68 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:33187640/1‑68 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC < 1:36719691/68‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC < 1:35318724/68‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC < 1:34916072/68‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:23398071/1‑68 GATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:27803814/1‑67 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:35164730/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:6729934/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:13006249/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:17542177/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:29560079/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:14903257/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:2742119/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:4166013/1‑68 TTACGCGCATCAGCAAGGTAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:6970785/68‑1 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:21389364/68‑1 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:36044207/68‑1 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:19675721/68‑1 ACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCTAACGCTGCCGCACC < 1:15240992/68‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:31069374/67‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:31243878/67‑1 GCATCAGCAAGGGAGAGGGGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:22470165/67‑1 GCAGCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:13634337/67‑1 ATCAGCAAGGGAGAGGTGCGGCAGCGACATTCTTGTCTCCATCAATCTAACGCTGCCGCACCTCTCC < 1:16183769/67‑1 CAGCAAGGGAGAGGTGCGGCAGCTACATTCATGACTCCTTCAATCTAACGCTGCCGCACCTCTCCCTT < 1:36489223/68‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:16067363/68‑1 GCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGC < 1:1585143/68‑1 gtGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:35688276/65‑1 gggGCGGCAGCGACATTCTTGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGC < 1:23933730/63‑1 GGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGC < 1:11092031/66‑1 GGTGCGGCAGCGACATTCATGACTCCATCAATCCACCGCTGCCGCACCTCTCCCTTGCTGATGCGC < 1:22984025/66‑1 ATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCA < 1:26247800/68‑1 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCGCCTTGCCGCACAAGGCCTGTTAAACAAA > 1:8136359/1‑67 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCGGGTAAACAAA > 1:33605727/1‑67 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:1291508/67‑1 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:33260380/67‑1 CGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC < 1:27725992/68‑1 CGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCT < 1:9081954/52‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964887‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |