| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1036003 = | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1036035 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
Only 100 of 133 total aligned reads displayed.
TTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1036078‑1036003‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > CP009273/1036035‑1036099 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:10070046/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:22884790/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:22930289/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:4770342/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:28201710/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:5817833/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:16472689/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:31847545/68‑1 TTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 1:9156214/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:16910983/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:11879075/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:512034/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:28303075/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:20845216/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:17926540/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:36326616/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:6450108/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:2327014/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:30046288/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:14509663/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:4227630/68‑1 TCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:12215510/68‑1 TCATCGATATGTCTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:35881104/68‑1 TCAACGATATGTTTCCGCTTTTCATATCTGCCATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:6891252/68‑1 ATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATC > 1:11931545/1‑68 ATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATC > 1:26109058/1‑68 TCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCA > 1:222673/1‑68 CGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAG < 1:9216735/68‑1 CGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAG < 1:18517724/68‑1 CGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAG < 1:29870903/68‑1 CGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAG < 1:704528/68‑1 CGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAG > 1:22386449/1‑68 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:36904421/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:24166717/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:25930698/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:26181922/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:36298903/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:35607125/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:3353779/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:31026724/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:2286329/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:10512707/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:17770661/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:21805354/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:6812081/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:21512216/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCAAATGCGCCGCATCAGG < 1:29329738/68‑1 GATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGAAGCGATGCTAATGCGCCGCATCAGG < 1:14778761/68‑1 GATATGATTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 1:30065779/68‑1 TATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 1:26064582/67‑1 TATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 1:15701969/67‑1 TATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 1:27339698/67‑1 TATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 1:15701990/67‑1 TATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 1:36593240/67‑1 TATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 1:5217342/67‑1 GATGCTAAAGCGCCGCATCAGGCAATCAATAATGACAGATATGAAAAGCGGAAACATATCGATGAAA < 1:17283589/67‑1 CGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCC > 1:3189201/1‑68 CGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCC > 1:31333637/1‑68 CGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCC > 1:20907329/1‑68 CGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCC > 1:23225679/1‑68 ATCAGGCAATCAATAATGTCAGATATGTAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT < 1:12306137/68‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT < 1:29061716/68‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT > 1:20192609/1‑68 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT > 1:27402923/1‑68 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT < 1:35395698/68‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT > 1:12958384/1‑68 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT > 1:22054757/1‑68 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATT > 1:22820796/1‑68 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAT < 1:4676529/67‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAT < 1:9598856/67‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAT < 1:30385022/67‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAT < 1:21341819/67‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAT < 1:16797920/67‑1 ATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAT < 1:21871978/67‑1 TCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTT < 1:35366894/68‑1 TCAGGCAATCAAAAATGTCAGATATTAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTT < 1:31020814/68‑1 AGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTT > 1:10135696/1‑68 AGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAATTTT > 1:29108418/1‑68 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:14144920/1‑68 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:19339905/1‑68 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:19339888/1‑68 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:6619179/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:17177263/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:20897259/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:1202488/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:9337571/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:10077268/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:493580/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:4841636/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:4143806/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:36635297/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:25810493/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:29338888/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:34756479/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:33839156/1‑67 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATACCATTTTTA > 1:29470116/1‑67 CAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:21153773/1‑66 CAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA < 1:17872666/66‑1 CAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:17099972/1‑66 CAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA < 1:28781884/66‑1 TTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1036078‑1036003‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > CP009273/1036035‑1036099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |