| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1036003 = | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1036035 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
Only 100 of 403 total aligned reads displayed.
GGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT > CP009273/1035968‑1036102 | gCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:910530/1‑68 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:19203749/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:30103260/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:25346308/1‑67 (MQ=255) tGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc > 1:27394998/1‑68 (MQ=255) tGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc > 1:3183893/1‑68 (MQ=255) tGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc > 1:22946508/1‑68 (MQ=255) tGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc < 1:13412490/68‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:35500557/68‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:13016602/68‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:11752319/68‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:27434218/68‑1 (MQ=255) tccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat < 1:9177073‑M1/39‑1 (MQ=255) aCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCCTCAGGcaatcaat > 1:8514613/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTTATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:14389354/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:18161404/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:27879577/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:36427177/1‑68 (MQ=255) cgcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat > 1:5109081/1‑68 (MQ=255) gcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg < 1:19355118/68‑1 (MQ=255) gcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg < 1:32170329/68‑1 (MQ=255) tCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa > 1:10942836/1‑68 (MQ=255) tCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa > 1:32520100/1‑68 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:29238568/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:9295075/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:7179701/68‑1 (MQ=255) gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGat > 1:24046556/1‑68 (MQ=255) gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGat > 1:27323020/1‑68 (MQ=255) aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata < 1:17458440/67‑1 (MQ=255) aGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa > 1:10813634/1‑68 (MQ=255) aGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa > 1:28161331/1‑68 (MQ=255) aGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa > 1:28524347/1‑68 (MQ=255) aGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa > 1:23330374/1‑68 (MQ=255) aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAg < 1:10172187/68‑1 (MQ=255) aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAg < 1:17246101/68‑1 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg < 1:36230486/68‑1 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg < 1:7865992/68‑1 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg > 1:29422005/1‑68 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGTATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:11236154/1‑68 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:34321935/1‑68 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:18709253/1‑68 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:5882849/1‑68 (MQ=255) acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa < 1:19757921/67‑1 (MQ=255) acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa < 1:28604863/67‑1 (MQ=255) acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa < 1:15488978/67‑1 (MQ=255) acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa < 1:4674869/67‑1 (MQ=255) acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa < 1:22183943/67‑1 (MQ=255) acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa < 1:2135329/67‑1 (MQ=255) gTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc > 1:33027847/1‑68 (MQ=255) aGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat < 1:574954/68‑1 (MQ=255) aGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat < 1:30647785/68‑1 (MQ=255) aGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat < 1:26886731/68‑1 (MQ=255) ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCTGATATGAAAAGCGGAAACata > 1:21454/1‑68 (MQ=255) GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata < 1:26064582‑M1/67‑1 (MQ=255) GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata < 1:24308996‑M1/67‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCTTCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:14778761‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:26181922‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:3353779‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:6812081‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:10512707‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:22834708‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:25930698‑M1/68‑1 (MQ=255) TGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa > 1:23078564‑M1/1‑68 (MQ=255) TGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa > 1:222673‑M1/1‑68 (MQ=255) GATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTGAGATATGAAAAGCGGAAACATATCgag < 1:36587667‑M1/68‑2 (MQ=255) TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa < 1:12215510‑M1/68‑1 (MQ=255) TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa < 1:28303075‑M1/68‑1 (MQ=255) TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa < 1:20845216‑M1/68‑1 (MQ=255) TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGGCAGATATGAAAAGCGGAAACATATCGTTGa < 1:6891252‑M1/68‑1 (MQ=255) GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa < 1:4770342‑M1/68‑1 (MQ=255) GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa < 1:10070046‑M1/68‑1 (MQ=255) GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa < 1:16472689‑M1/68‑1 (MQ=255) GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa < 1:17804408‑M1/68‑1 (MQ=255) GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa < 1:13770977‑M1/68‑1 (MQ=255) aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt < 1:16772964/67‑1 (MQ=255) aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt < 1:1587036/67‑1 (MQ=255) aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc < 1:23535993/68‑1 (MQ=255) ttAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCt > 1:12476709/1‑68 (MQ=255) aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:20328558/1‑68 (MQ=255) aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:3686815/1‑68 (MQ=255) catcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGATACATATCCATGAAAGCGATCTTaa > 1:20732754/1‑67 (MQ=255) catcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa > 1:16996341/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:33900798/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:35815662/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:21080899/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:21728202/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:3828843/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:31476250/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:29729128/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:24816430/1‑67 (MQ=255) atcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt < 1:9598856‑M2/60‑1 (MQ=255) atcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt < 1:21871978‑M2/60‑1 (MQ=255) atcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt < 1:31096204‑M2/60‑1 (MQ=255) atcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt < 1:30385022‑M2/60‑1 (MQ=255) tcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt < 1:35366894‑M2/62‑1 (MQ=255) aggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAatttt > 1:29108418‑M2/5‑68 (MQ=255) gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:4143806‑M2/3‑67 (MQ=255) gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:36635297‑M2/3‑67 (MQ=255) gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:34756479‑M2/3‑67 (MQ=255) gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:1202488‑M2/3‑67 (MQ=255) | GGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT > CP009273/1035968‑1036102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |