| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 15 (0.040) | 5/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 359 total aligned reads displayed.
TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1111156‑1111080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111111‑1111177 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATTCTTCAGAATGGCATCCG > 1:703811/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:18251580/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:26121376/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:32526062/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:13914933/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:21233189/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:23208091/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:393428/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGG < 1:24093157/68‑1 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:22700190/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:11155119/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:4110705/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:22605599/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:17451733/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:15932000/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:14512438/1‑67 ACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCG > 1:21713262/1‑67 CACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGC > 1:24778779/1‑68 CACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGC < 1:32588018/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAATTCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:34739685/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:17041512/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA > 1:34085655/1‑68 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:13024452/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:12508413/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:33651282/68‑1 ACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCA < 1:32872225/68‑1 cGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAGAT < 1:22423001/66‑1 AGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAGAT < 1:6838780/67‑1 AGGCGTTCCTTCACGCTATTAAATCTCCCAACCCGCATGCGTCAGAATGGCATCCGGCATGGGAGAT < 1:5029124/67‑1 CCTTCACGCTATAAAATCTCCCATCCCGCATGCTGCAGAAGGGCAGCCGGCATGGGAGATTTAATAGC < 1:223932/68‑1 TTCACGCTATTAAAACCCCCATGCCGGATGCTTCAGAATGGCATCCGGCATGGGAGATTTAATAGCGT < 1:9529676/68‑1 CACGCTATTAAATCTCCCATCCCGGATGCTTCAGAAGGCCCTCCGGCATGGGAGATTTAATAGCGTGA < 1:34269636/68‑1 CATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTA > 1:19070894/1‑67 CATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTA > 1:24988943/1‑67 aaCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:4473717/66‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:16518434/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:14937456/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:2988107/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:8995038/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:23502792/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAC < 1:33433722/68‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAA < 1:3620051/67‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAA < 1:15225518/67‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAA < 1:18372208/67‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTA < 1:6032657/66‑1 ATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTA < 1:12899574/66‑1 TCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGCGTAACC < 1:13691538/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:31674530/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:25362718/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:30864986/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:34374634/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:35232621/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:36776134/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:36914612/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:3703586/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:3775802/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:6302489/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:6640216/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:7144499/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:7519471/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:9304143/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:19543394/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:10181904/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:11678200/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:12087844/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:13463104/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:1460721/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:15864550/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:16321310/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:17812948/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:18637290/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:18989538/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:19972501/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:20220810/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:23381131/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:29167057/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:24348376/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:29046854/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:10087921/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:28592657/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:27103770/68‑1 CCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:2770566/68‑1 CCGGCATGGGAGATTTAAAAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCA < 1:10761707/68‑1 GGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACA < 1:30442535/68‑1 GGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACA < 1:10497497/68‑1 GGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACA < 1:17416783/68‑1 GCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT > 1:776620/1‑68 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:30559314/67‑1 CATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACAT < 1:8632135/67‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT > 1:17645105/1‑68 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:26383329/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:1433706/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:3651920/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:6883252/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:29695343/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:35881949/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:3556521/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:10437998/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT < 1:22014613/68‑1 ATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATA < 1:32068383/67‑1 TTTAAAACACGCCCGGAAGGCGTTCCTTCACGCTATTAAATCTCCCATGCCGGATGCTTCAGAATGGCATCCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1111156‑1111080‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111111‑1111177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |