| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 15 (0.040) | 5/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 650 total aligned reads displayed.
CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCG > CP009273/1111013‑1111143 | cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTaa > 1:488429/1‑68 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:10437998‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:12022014‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:34192455‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:35881949‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:14402676‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:3540885‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:34363746‑M1/2‑1 (MQ=255) ccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATg < 1:8575593/67‑1 (MQ=255) ccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGc < 1:10701142/68‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGc > 1:444667‑M1/65‑68 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:16042458‑M1/5‑1 (MQ=255) cGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGcc < 1:3078746/68‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaactctcccATGCCgg < 1:21238308‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:28851197‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:20220810‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:19972501‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:18805421‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:19193783‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:18989538‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:31674530‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:28295969‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:21850597‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:7144499‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:7519471‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:232448‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:25136030‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:24348376‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:33921451‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:10181904‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:6302489‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:37076535‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:36552849‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:1349741‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:18637290‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:33044621‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:32223724‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:17430632‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:29795098‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:18285161‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgatattaaatctcccATGCCgg < 1:36235863‑M1/7‑1 (MQ=255) ttCCAGGGGGCGCATTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:33564031/68‑1 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:26829984/68‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:2654969‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:6549645‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:8995038‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:22212970‑M1/9‑1 (MQ=255) tCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt > 1:28560542/1‑67 (MQ=255) tacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGATGc > 1:16795373‑M1/58‑68 (MQ=255) gggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:12726906/1‑68 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:23610484/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:32505457/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:31075848/1‑67 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:4273801/1‑66 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:14574460/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:34709639/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:14947900/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:1533459/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:24715469/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:31892756/66‑1 (MQ=255) gggAGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:28998430/66‑1 (MQ=255) gcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGa < 1:6025899/67‑1 (MQ=255) ccAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCAt > 1:10882295/1‑67 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:35036611/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:30080797/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:27281626/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:13004526/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:32668263/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:23461117/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:802417/1‑68 (MQ=255) ttttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATggg < 1:22994085/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:16536399/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:1761346/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:5289312/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:20818651/68‑1 (MQ=255) tATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgaga > 1:22398055/1‑68 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:17239299/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:10001365/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:116923/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:3032496/68‑1 (MQ=255) tCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAtt > 1:7868310/1‑68 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:19539374/68‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:29478633/68‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:17869130/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:14008687/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:25749358/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:15487407/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg < 1:36943267/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:9390448/1‑68 (MQ=255) ttcacgctattaaatctcccATGCCGGATGCCATTCTGAAGCATCCGGGCTGGGTGGTTTAATAGCGt < 1:26245949‑M1/48‑1 (MQ=255) acgctattaaatctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGGGTTTTAATAGCGTGaa < 1:9529676‑M1/51‑1 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaac > 1:21597164/1‑67 (MQ=255) gATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg < 1:24085555/67‑1 (MQ=255) gATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg < 1:11390536/67‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACg > 1:25938976/1‑66 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACg > 1:22616052/1‑66 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:27667094/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:12480025/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:15879750/1‑67 (MQ=255) atctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt < 1:6838780‑M1/60‑1 (MQ=255) | CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCG > CP009273/1111013‑1111143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |