New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581228 (0.510)17 (0.040)
+G		 10/110 NT 8.3% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 153 (0.340)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161524‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCA  >  CP009273/1162078‑1162124
                                                          |                                               
AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGGT                                        >  1:20739036/1‑68
       GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAA                                  >  1:25253877/1‑67
       GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGAAa                                 >  1:18806020/1‑67
        GGGGTCACGTTGCCTACGCCATTGAAAAAGATTGTGATTGGCGGCGGCGGGGCGGCGGGGGTTGA                                   >  1:27751347/1‑65
        GGGGTCACGTTGACTACGCCATTGAAAAAGTTTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAAa                                 >  1:14191012/1‑66
        GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAa                                 >  1:3415685/1‑66
         GGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTAGAAa                                 >  1:15311035/1‑65
                GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCTGCGGGTGTAGAAATCTCCctc                         >  1:432179/1‑64
                GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGGGGGTGTAGAAATGTCCGCag                        >  1:17382062/1‑66
                 TTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTGA                       >  1:21896504/1‑68
                    ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTCAAat                    >  1:29224878/1‑66
                    ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCGCCGCTGAATT                    >  1:11527155/1‑68
                      TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCGCTGAATTGC                  >  1:2219511/1‑68
                          CCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAA              >  1:5357272/1‑68
                          CCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCGCTGAATTGCACA               >  1:31444780/1‑67
                                    AGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTAGAACTCTCCGCTGAATTGCACCACGCGGTCAA     >  1:26705140/1‑67
                                      ATTGTGATTGTCGGCGGCGGGGCGGGGGGTGTAGAACTCTCCGCTGAATTGCACAAAGCGGTCAGGCg  >  1:2881061/1‑67
                                                          |                                               
AATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161524‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCA  >  CP009273/1162078‑1162124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.