| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 228 (0.510) | 17 (0.040) +G |
10/110 | NT | 8.3% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 153 (0.340) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 380 total aligned reads displayed.
TGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161515‑1161646 | ggTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:20796818/1‑67 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:23908926/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:20961873/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:36014707/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:13230235/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:25135048/1‑65 (MQ=255) taaATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtg > 1:24009171/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg < 1:36580421/68‑1 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:12913511/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:21195529/1‑68 (MQ=255) aaaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:8746006/1‑68 (MQ=255) aaTTTAAGGGGTTCACGTTGTCTACGCCATTGAATAAGATTGCGATTGTCGGCGGCGGcgcgacgggt < 1:26930726‑M1/68‑11 (MQ=255) aaTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCtggtgg > 1:35775763/1‑67 (MQ=255) aaTTTAAGGGGGACACGTTGACTACGCCATTGAAAAAGATTGCGATTGTCGGCGGCGGcgcgacgggt < 1:23591248‑M1/68‑11 (MQ=255) aTTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGc < 1:29833798/68‑1 (MQ=255) ttAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTg < 1:563646/68‑1 (MQ=255) aGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaa > 1:21594009/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:27266939/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:31522962/1‑68 (MQ=255) ggggTCACGTTGCCTACGCCATTGAAAAAGATTGTGATTGGCGGCGGCGGggcggcgggggttga > 1:27751347‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:30709502/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:23740930/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:7971085/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:31657136/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTGGTTGGCTGGaaaa > 1:2845191/1‑67 (MQ=39) ggggTCACGTTGACTACGCAATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:14392304/1‑68 (MQ=255) gggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaag < 1:6818172/66‑2 (MQ=255) gggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa < 1:15724088/66‑1 (MQ=255) gggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg > 1:20221901/1‑68 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:4311516/67‑1 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:2872100/67‑1 (MQ=255) ggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATg < 1:31432305/67‑1 (MQ=255) cACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCa < 1:12059766/67‑1 (MQ=255) cGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAac > 1:5454873/1‑67 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:1995880/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:29158849/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:33631891/1‑68 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:32760242/1‑68 (MQ=255) ttGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgccgggtgtagaactctccgctga > 1:21896504‑M1/1‑41 (MQ=255) ttGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:35478121/1‑68 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:14923383/1‑67 (MQ=255) tGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:26064715/1‑67 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgacgggtgtagaactcgccgctgaatt > 1:11527155‑M1/1‑38 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCgacgggtgtagaaatctccccagaatt > 1:3228091‑M1/1‑41 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCACcaca > 1:3832536/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:15109496/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:24605013/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:14482540/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:26520177/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:10862807/1‑65 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCt < 1:18957421/67‑1 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:32132798/1‑68 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:4613751/1‑68 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:5811159/1‑68 (MQ=255) aCGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTggg < 1:26778795/68‑1 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:34409914/68‑1 (MQ=255) gCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGc < 1:25901989/68‑1 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcggctggtgtagaactctccgcagaattgcaca > 1:18327458‑M1/1‑32 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGTGTTGAAATCTCCACACAAATGGGGCa > 1:36452554/1‑68 (MQ=25) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:19400855/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:369198/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGGTGGGCTCGAAATGGCAGCAGAGCTGGGGCa > 1:13917652/1‑68 (MQ=38) ttGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATaa < 1:7511469/68‑1 (MQ=255) tGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATaa > 1:34137159/1‑67 (MQ=255) tGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAg < 1:29295233/68‑1 (MQ=255) tGAAAAAGATTGTGATTGTCGGCGGCGGGGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAg < 1:12451724/68‑1 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:18617291/1‑67 (MQ=255) attgtgattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagca > 1:5343732‑M1/1‑20 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:22938747/1‑67 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc > 1:27573932‑M1/1‑15 (MQ=255) gattgtCGGCGGCGGTGCTGGTGGGCTGGAACTGGCAGCACAGCTGCGCCATAAGCTGCGACGCAAGa > 1:917058/1‑68 (MQ=255) attgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc > 1:24855169‑M1/1‑14 (MQ=255) attgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc > 1:34281863‑M1/1‑14 (MQ=255) attgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc < 1:25417100‑M1/67‑54 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:7327315/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:14672222/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:17513139/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:17694233/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:21491855/1‑68 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:5971829‑M1/1‑12 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:30433887‑M1/1‑12 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca < 1:30135685‑M1/68‑57 (MQ=255) tCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca > 1:33264055‑M1/1‑10 (MQ=255) tCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaaaa > 1:20724414/1‑68 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagct > 1:17312409‑M1/1‑9 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:25800552‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:34854284‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:33708499‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:23241339‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:1011168‑M1/67‑59 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacgg < 1:9486972‑M1/68‑64 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacgg > 1:35121111‑M1/1‑5 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacgg < 1:12629037‑M1/68‑64 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:4944876‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:33499073‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:8446163‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:15923002‑M1/67‑63 (MQ=255) gcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt > 1:19650991‑M1/1‑4 (MQ=255) gcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCaaa > 1:10523257/1‑68 (MQ=255) ggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggtt < 1:22354440‑M1/67‑66 (MQ=255) | TGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161515‑1161646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |