| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 488 (1.100) | 25 (0.070) | 11/90 | NT | 7.0% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 277 (0.770) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 131 total aligned reads displayed.
ATTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641386‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641377‑1641443 ATTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCA > 1:12739181/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:16166952/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:15730628/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:22624231/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:27366261/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:28884095/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:2925512/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:34098643/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:36638741/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:4853684/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:48612/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:6239378/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:6548529/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:8227725/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:10261604/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCC < 1:34986531/66‑1 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCC < 1:9798470/66‑1 TTCTTAAGTCGCATTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:18386851/1‑68 TTCTTAACTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGACAG > 1:27548337/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:10971847/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:20169997/68‑1 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:23319529/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:25324793/1‑68 CTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:33146890/1‑68 TAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAAC > 1:22925941/1‑68 AAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAAC > 1:15421368/1‑67 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACTAGGGATATGCCAGAAACGC > 1:34535986/1‑68 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:20097779/1‑68 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG > 1:25448238/1‑68 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:31256542/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:30845800/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:34864800/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:13449946/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:27104827/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:11543459/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:11350304/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:10223882/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:18277914/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:1761562/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:18858902/1‑67 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGCAACGC > 1:16426235/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGAC < 1:16272600/68‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGAC < 1:24318738/68‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:14251205/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:18222705/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:31718190/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:4321344/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:28142461/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:975626/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:10431057/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:21171474/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:19830075/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:33523363/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:21779579/1‑65 CGCGTTTCTGGTGTGCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:24934475/66‑1 GCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGAC < 1:29986667/67‑1 TCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGA < 1:33132796/68‑1 CTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAA < 1:35476679/68‑1 GTTCATTTTCGGGTGGTGTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTAC < 1:19550540/68‑1 GTTCATTTTCGGGTGGATTGTTACTGGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTAC < 1:18369422/68‑1 GTTCATTATCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTAC < 1:29010527/68‑1 TCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGCATATGCCAGAAACGCGACTTAAGAATCTACC < 1:17192168/67‑1 TCATTTTCGGGGGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACC < 1:25531756/67‑1 taTTCGGGTGGTTTGTTACTTGTATTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:3496643/66‑1 aTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:1209249/67‑1 aTTTCGGGTGGCTTGTAACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:22739136/67‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:29855846/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:23296923/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:18718938/68‑1 cTCGGGGGGTTGGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGA < 1:24364339/67‑1 GGGTGGTTTGTAACTTGTTTAACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATG < 1:3298021/68‑1 TGGTTTGTTACTTGTTTTACCGGGGATCTGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:11567261/67‑1 TGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:7812173/67‑1 TGGTTTGCTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:23128914/67‑1 TTGTTACTTGTTATACCGGGGATACGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGC < 1:7115995/68‑1 cCCGGGGAAAGGCCAGAAACCCGACTTAAGAATCTACCCAATGAATGGATATGCACTCAACCGAATCG < 1:15176212/67‑1 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCA > 1:31614015/1‑68 AGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAA > 1:17996940/1‑67 AGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAA > 1:25614123/1‑67 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:18279497/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:9446057/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:23482549/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:23764267/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:7316709/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:33649587/67‑1 ACGCGAGTTAAGAATCTACCCTATGAATGGATATGCACTCTACCGAATCGATCTTGGTTTCAATCTTT < 1:2013793/68‑1 ACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:9636870/68‑1 ACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:14320765/68‑1 ACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:14361578/68‑1 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:21896916/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:6713805/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:19748018/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:506365/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:17356032/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:26864613/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:36333569/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:30782272/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:32425748/1‑68 GCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTT < 1:24759414/68‑1 GACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > 1:5599860/1‑68 ATTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641386‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641377‑1641443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |