| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 488 (1.100) | 25 (0.070) | 11/90 | NT | 7.0% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 277 (0.770) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 599 total aligned reads displayed.
GCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAC > CP009273/1641247‑1641378 | gCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGcgcg > 1:34676101/1‑68 (MQ=255)aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:6713805‑M1/65‑68 (MQ=255) cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCACCCCGt > 1:13948659/1‑68 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGcgcg < 1:19701877/66‑1 (MQ=255) aagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGtt > 1:23764267‑M1/63‑68 (MQ=255) gACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt > 1:7831441/1‑67 (MQ=255) ttgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGTTTCt > 1:18007457‑M1/59‑67 (MQ=255) ttgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGTTTCt > 1:25614123‑M1/59‑67 (MQ=255) cATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:24620499/1‑68 (MQ=255) atatGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCtta > 1:13557609/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTTGCata > 1:1642473/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:9795862/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:4842302/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACAGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:17422516/1‑67 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCTTCTcccc > 1:27270858/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:2016335/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:33587945/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:22960899/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:22997731/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:370863/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:26074445/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:8913617/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCATCCTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:19101893/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:9595902/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:32742077/1‑68 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCgg > 1:16736410/1‑68 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:24033758/67‑1 (MQ=255) ttACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaa > 1:10057282/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGCCTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:12033768/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:7616059/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:30873676/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:25441197/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:29237313/1‑68 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCCGCGCGGTTCTGGCATATCCCCGGTaaa > 1:5908743/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:11300232/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:8159482/1‑67 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:32429590/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:3910102/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:22375735/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:15839678/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATACCCGGTAAAACaa > 1:2485885/1‑68 (MQ=255) aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGt < 1:2209071/68‑1 (MQ=255) aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGt < 1:15093277/68‑1 (MQ=255) cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa > 1:26297064/1‑67 (MQ=255) cGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa > 1:35949309/1‑67 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:28588836/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:8626397/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:4089130/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:26689956/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:13051265/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATAGCCCCGGTAAAACAAGTTAc > 1:25073645/1‑68 (MQ=255) gcatatccattcatagggtagattcttaagtCGCGTTTCTGGCGTATCCCCGGTATAACAAGTAACaa < 1:7115995‑M1/37‑1 (MQ=255) cTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATAACCCCGGTAAAACAAGTAACaa > 1:34225012/1‑68 (MQ=255) ttACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacc > 1:3328560/1‑67 (MQ=255) tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccc > 1:5577797/1‑66 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccac > 1:27947758/1‑67 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccac > 1:31231160/1‑67 (MQ=255) gcgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCg > 1:7263296/1‑68 (MQ=255) gcgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCACCGGTAAAAAAAGTAACAAACCACCCg > 1:10631221/1‑68 (MQ=255) attcatagggtagattcttaagtCGCGTTTGTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCg < 1:30730569‑M1/45‑1 (MQ=255) tcatagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACCAACCCCCCgag < 1:24364339‑M1/47‑2 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaa < 1:16112684/68‑1 (MQ=255) cACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaa > 1:35204560/1‑68 (MQ=255) atagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAATACAAGTAACAAACCACCcgaata < 1:3496643‑M1/49‑3 (MQ=255) atagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTTACAAGCCACCCgaaat < 1:22739136‑M1/49‑2 (MQ=255) atagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa < 1:29855846‑M1/49‑1 (MQ=255) atagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa < 1:23296923‑M1/49‑1 (MQ=255) aCCGCCCAGCCTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAACCCACACGaaaa > 1:27026262/1‑68 (MQ=255) ggtagattcttaagtCGCGTTTCTGGCATATGCCCGGTAAAACAAGTAACAAACCACCCGAAAATGa < 1:17192168‑M1/52‑1 (MQ=255) gtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACCAGTAACAATCCACCCGAAAATGAac < 1:18369422‑M1/54‑1 (MQ=255) gtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACACACCACCCGAAAATGAac < 1:19550540‑M1/54‑1 (MQ=255) ccAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAac > 1:4475552/1‑68 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:3147734/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:33845124/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:18767328/68‑1 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAACCCACCCGAAAATGACCACCAg > 1:15539193/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCCCCCGAAAATGAACACCAg > 1:29454456/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCa > 1:21871353/1‑67 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:10367822/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:12598277/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:36759524/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:35552951/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:23518/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:28782161/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:30266279/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:30467426/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:21331777/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:21017205/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:20641688/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:34413756/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:3614975/1‑68 (MQ=255) actCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGaa > 1:14543203/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:5032345/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:3298468/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:32105756/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:31651663/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:13322791/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:11736576/1‑67 (MQ=255) CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgcg < 1:14251205‑M1/66‑1 (MQ=255) CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgcg < 1:19830075‑M1/66‑1 (MQ=255) | GCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAC > CP009273/1641247‑1641378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |