| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2213096 | NA (NA) | 3 (0.010) | 3/100 | NT | NA | intergenic (‑136/+75) | osmF/bglX | putative ABC superfamily transporter periplasmic‑binding protein/beta‑D‑glucoside glucohydrolase, periplasmic |
| ? | CP009273 | = 2213103 | NA (NA) | intergenic (‑143/+68) | osmF/bglX | putative ABC superfamily transporter periplasmic‑binding protein/beta‑D‑glucoside glucohydrolase, periplasmic | |||||
GCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2213025‑2213096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGCTC < CP009273/2213103‑2213038 GCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGT > 1:14316022/1‑67GCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGT > 1:17961485/1‑67GCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGT > 1:34875228/1‑67GCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGT > 1:25422438/1‑67GCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGT > 1:24256524/1‑67 CGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCC > 1:4897002/1‑68 CGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCC > 1:25929776/1‑68 CGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCC > 1:2341557/1‑68 CGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCAGGAAACGCCGG > 1:35918442/1‑68 AGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCAGGAAACGCCGGGCCG > 1:9941904/1‑68 TCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCAGGAAACGCCGGACCGAATAT > 1:8382149/1‑68 TCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCC > 1:26238747/1‑68 TCCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCC > 1:9266273/1‑68 CCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCG < 1:28002218/68‑1 CCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCG < 1:30817942/68‑1 CCGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCG < 1:18855327/68‑1 CGGCAGGAAAGGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:17234876/68‑1 CGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:35620410/68‑1 CGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:11074133/68‑1 CGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:5187535/68‑1 CGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:15462260/68‑1 CGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:34038604/68‑1 CGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:30230501/68‑1 CGGCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGC < 1:20420233/68‑1 GCAGGAAACGCCGGCCCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGCTC > 1:687208/1‑68 GCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGCTC > 1:4110958/1‑68 GCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGCTC > 1:20954526/1‑68 GCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGCTC > 1:643168/1‑68 GCAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGCTC > 1:32507263/1‑68 GCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2213025‑2213096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcAGGAAACGCCGGACCGAATATGCCTCTTAAGTATTTATCTGATTCTGCAACTGAATCCTTCCGCTC < CP009273/2213103‑2213038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |