| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3498161 = | NA (NA) | 6 (0.020) | 5/86 | NT | NA | noncoding (17/36 nt) | REP249 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP249 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 3498192 = | NA (NA) | intergenic (+50/+102) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
Only 100 of 154 total aligned reads displayed.
TTGGGGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3498240‑3498161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatgctggcgcGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT > CP009273/3498192‑3498257 TTGGGGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATG < 1:17564804/68‑1 TGGGGAGAGGGTTAGGTTGTGGGGAACGTACGGGAGGTAAAATTCAACGCGCCAGCATCGCCGTATGC < 1:1081057/68‑1 GGGGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCACGGCGCCAGCATCGCCGGATGCG < 1:25294046/68‑1 GGGGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCG < 1:34484900/68‑1 GGGGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCG > 1:25880388/1‑68 GGAGAGGGTTAGGTTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:57541/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGCTGCGAT > 1:17825974/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:36074951/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:3246357/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:31110410/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:27902995/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:35713704/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:36483585/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:13501698/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:4223796/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:5015552/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:11345388/1‑68 GGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:769869/1‑68 GAGAGGGTTATGGTGAGGGGAACTTACGGGATGTAAATTTCAACGCGCCAGCATCGCCGGATGCGAT < 1:8681995/67‑1 GAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT < 1:7781560/67‑1 GAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT < 1:36395488/67‑1 GAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:10437974/1‑67 GAGAGGGTTAGGGTGAGGGGAACGAACGGGATGTAAAATTCCCCGCGCCAGCAGCGCCGGATGCGAT < 1:21430276/67‑1 GAGAGGGTTAGGGGGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT < 1:10217038/67‑1 AGAGGGTTTGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATG < 1:16586895/67‑1 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:27362233/1‑66 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:24549332/1‑66 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:23199975/1‑66 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:6226904/1‑66 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:26212744/1‑66 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:33240306/1‑66 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:29931308/1‑66 AGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:36269086/1‑66 GAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:5516168/1‑65 GAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGAT > 1:33553798/1‑65 GGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTG > 1:13827649/1‑67 GGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTG > 1:1487061/1‑67 GGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTG > 1:33007747/1‑67 GGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTG > 1:21509929/1‑67 GGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTG > 1:18257152/1‑67 GGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTG > 1:25036362/1‑67 GGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGC > 1:26134643/1‑68 GGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGC > 1:1369759/1‑68 TTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGCGC > 1:33567152/1‑68 TTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGCG < 1:25756300/67‑1 cGGGCAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGCGCGTTGAAT < 1:12316529/66‑1 TGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGT < 1:26042606/67‑1 TCAACGCCCCAGCATCGCCGGATCCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAC < 1:8752286/68‑1 GCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGC > 1:34486717/1‑68 GCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGAACCCTTACCCTCTCCCCAAATGGGg > 1:1684248/1‑67 CGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG > 1:24807772/1‑68 CGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG > 1:34927880/1‑68 CGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG > 1:33678275/1‑68 CGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG > 1:11085028/1‑68 gaaGCTGGCGCGTTGAATTTTACATCCCGTACTTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:34698643/64‑1 GATGCTGGGGCGTTGAATTTTACATGCCGTACGTTCCCCTCACCCTCACCCTCTCCCCAAAGGGGCG < 1:17444968/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGA > 1:769804/1‑68 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:23749376/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:32921197/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:15198394/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:3670295/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:3961056/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:11276303/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:882277/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:26810703/67‑1 GATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCG < 1:20422219/67‑1 TGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGG < 1:7957558/68‑1 TGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAG < 1:35978027/67‑1 GCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCTCACCCTAAACCACACCCCAAAGGGGCCAGGG > 1:2097886/1‑68 CTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCCCCCAAACCCTCGCCCCAAAGGCGCGAGGGG > 1:3944603/1‑68 TGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG < 1:4449008/67‑1 TGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG < 1:1262831/67‑1 TGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG < 1:29064575/67‑1 TGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG < 1:30387887/67‑1 TGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG < 1:16277994/67‑1 TGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG < 1:3055898/67‑1 TGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGG < 1:10087769/67‑1 GGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGAC < 1:29821991/68‑1 GGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGAC < 1:25400313/68‑1 CGCGTTGAATTTTACATCCCGTACGTTCCCCTCCCCCTAACCCTCTCCCCAAAGGGGCGCGGGGCCCG > 1:703048/1‑68 CGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCG > 1:34127293/1‑68 CGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCG > 1:4963899/1‑68 CGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCG > 1:13583100/1‑68 CGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCG > 1:31122074/1‑68 CGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCG > 1:19832878/1‑68 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCACAGGGGCGAGGGGACCGT < 1:21042011/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCACAGGGGCGAGGGGACCGT < 1:25353873/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:10645122/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:10614964/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:10427447/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:21446622/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:5910040/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:11946778/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:20414595/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:15770302/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:15915304/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:20082069/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:19912257/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:31620563/68‑1 GCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT < 1:19541513/68‑1 TTGGGGAGAGGGTTAGGGTGAGGGGAACGTACGGGATGTAAAATTCAACGCGCCAGCATCGCCGGATGCGATGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3498240‑3498161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatgctggcgcGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGT > CP009273/3498192‑3498257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |