| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3498161 = | NA (NA) | 6 (0.020) | 5/86 | NT | NA | noncoding (17/36 nt) | REP249 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP249 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 3498192 = | NA (NA) | intergenic (+50/+102) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
Only 100 of 665 total aligned reads displayed.
CTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAA > CP009273/3498094‑3498228 | ctGCCGCGCCAATCGCATCTCCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATg < 1:5416681/68‑1 (MQ=255) acggtcccctcgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacgc < 1:15915304‑M1/2‑1 (MQ=255) gCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATgcg < 1:30225767/68‑1 (MQ=255) gCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATgc > 1:32959667/1‑67 (MQ=255) cggtcccctcgcccctttggggagagggttagggtgagggtaacgtacgggatgtaaaattcaacgcg > 1:1988590‑M1/66‑68 (MQ=255) cggtcccctcgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacgcg > 1:4963899‑M1/66‑68 (MQ=255) cgggcccctcgcccctttggggagagggttagggggaggggaacgtacgggatgtaaaattcaacgcg > 1:112262‑M1/66‑68 (MQ=255) ggtcccctcgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacgcg < 1:10235210‑M1/3‑1 (MQ=255) cgcgCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGcc > 1:1962916/1‑68 (MQ=255) cccctcgcgcctttggggcgagggtttgggggaggggaacgtacgggatgtaaaattcaacGCGCCAg > 1:3944603‑M1/62‑68 (MQ=255) cccctcgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacGCGCCa < 1:3055898‑M1/6‑1 (MQ=255) cccctcgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacGCGCCAg > 1:2959323‑M1/62‑68 (MQ=255) ccctggcccctttggggtgtggtttagggtgagggtaacgtacgggatgtaaaattcaacGCGCCAgc > 1:2097886‑M1/61‑68 (MQ=255) ccctcgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacGCGCCAgc > 1:26029830‑M1/61‑68 (MQ=255) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAgca < 1:21646509/67‑1 (MQ=255) tcgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacGCGCCAgcatc < 1:2627158‑M1/11‑1 (MQ=255) cgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacGCGCCAgcatcg > 1:34927880‑M1/57‑68 (MQ=255) cgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacGCGCCAgcatc < 1:882277‑M1/11‑1 (MQ=255) cgcccctttggggagagggttagggtgaggggaacgtacgggatgtaaaattcaacGCGCCAgcatc < 1:35836655‑M1/11‑1 (MQ=255) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCg < 1:15587356/68‑1 (MQ=255) ccTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCg > 1:12841693/1‑68 (MQ=255) ttAACTATTGATAATAAAAGACATTACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGAt < 1:1522109/68‑1 (MQ=255) aCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGAt > 1:34524052/1‑65 (MQ=255) aCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGAt > 1:27712494/1‑65 (MQ=255) aCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGAt > 1:20105650/1‑65 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGatgatg > 1:11947022/1‑68 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:10747502/1‑68 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:32596639/1‑68 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:30105569/1‑68 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:2699664/1‑68 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:37064075/1‑68 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:7774909/1‑68 (MQ=255) cTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:16477518/1‑68 (MQ=255) tATTGATAATAAAAGACATTACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGCAGCTg > 1:18140048/1‑67 (MQ=18) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:842315/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:16154824/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:13262550/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:1888011/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:25393032/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:4720553/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:24542489/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:24169561/1‑67 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTg > 1:7445687/1‑67 (MQ=255) ataataAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGt > 1:2525752/1‑68 (MQ=255) ataaAAGACATTAACCGTAGGCGGGTTAAGATCCGCCAGCATCGCTTGGTGCGATGCTGGCTCGTTGa < 1:31671389/68‑1 (MQ=21) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGa < 1:22611839/68‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGa < 1:20514649/68‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGa < 1:12579017/68‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGa < 1:27361515/68‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCACCGCATCCGGCGATGCTGGCGCGTTGa < 1:13632899/68‑1 (MQ=255) aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAttt < 1:33754348/68‑1 (MQ=255) aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAttt < 1:1948220/68‑1 (MQ=255) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCCTCCGGCGATGCTGGCGCGTTGAAtttt > 1:7106781/1‑68 (MQ=255) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAtttt > 1:21417514/1‑68 (MQ=255) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAtttt > 1:9283983/1‑68 (MQ=255) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAtttt > 1:17466132/1‑68 (MQ=255) aCATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTAc > 1:14629893/1‑68 (MQ=255) aCATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTAc > 1:30824062/1‑68 (MQ=255) aCATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTAc > 1:14909638/1‑68 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACAt < 1:20266481/68‑1 (MQ=255) ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATc < 1:32168526/68‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATccc < 1:10488007/68‑1 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATccag > 1:36692640/1‑66 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCg > 1:22426694/1‑68 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCg < 1:3540829/68‑1 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCg < 1:28116519/68‑1 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCg < 1:26635184/68‑1 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCg > 1:23070588/1‑68 (MQ=255) aCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCg > 1:5779142/1‑68 (MQ=255) ccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGt > 1:9697448/1‑68 (MQ=255) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGt < 1:8007310/68‑1 (MQ=255) gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGa < 1:28517134/48‑1 (MQ=255) gCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGtt > 1:32842560/1‑67 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATcc < 1:5984888/58‑1 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTc > 1:21292360/1‑67 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTc > 1:23804603/1‑67 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTc > 1:33326037/1‑67 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTc > 1:14098288/1‑67 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTc > 1:20814533/1‑67 (MQ=255) ccGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTc > 1:31162850/1‑67 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTccc < 1:6797170/68‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTcc < 1:25641303/67‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTcc < 1:11554254/67‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTc > 1:18506780/1‑67 (MQ=255) aaGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAc < 1:2185145/68‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:24784972/68‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:17246951/68‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:16871533/68‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:24300323/68‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:10012201/68‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:36486979/68‑1 (MQ=255) aGATGCGCCAGCATCGCACCCGGCGATGCTGGCGCTTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:36112307/68‑1 (MQ=255) aGATGCGCCAGAATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcc < 1:24010828/68‑1 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACTTTCCCCTCACCCt > 1:6275585/1‑68 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCt > 1:28974425/1‑68 (MQ=255) aTGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCCt > 1:35156082/1‑68 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCAcccga > 1:430409/1‑66 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCt < 1:29147483/67‑1 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTa > 1:34195290/1‑68 (MQ=255) GCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTaa > 1:33567152‑M1/1‑68 (MQ=255) | CTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAA > CP009273/3498094‑3498228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |