| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3533124 | NA (NA) | 6 (0.020) | 5/94 | NT | NA | noncoding (20/34 nt) | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3533141 | NA (NA) | intergenic (+76/‑381) | yhgF/feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A | |||||
Only 100 of 105 total aligned reads displayed.
GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3533051‑3533124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcgttcGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCAG < CP009273/3533141‑3533075 GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAG > 1:28973861/1‑68 GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAG > 1:36489743/1‑67 GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAG > 1:3264180/1‑67 CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGG < 1:36184625/67‑1 CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGG < 1:18900364/67‑1 CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGG < 1:8827708/67‑1 AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCG < 1:11269792/68‑1 AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCG < 1:19371949/68‑1 AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT < 1:21924929/68‑1 AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT < 1:27492361/68‑1 AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTC > 1:1636764/1‑68 AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTC > 1:20668305/1‑68 AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTC > 1:13926905/1‑67 AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTC > 1:3302061/1‑67 TAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCGTTGC < 1:6739502/67‑1 TTTGCACGAAATCGTAGGGCAGTTAGGGCGTTCGTTGCGAGATGCGGCGTGAACGCCGTATCTGCCCT > 1:32822103/1‑68 ACGAAATCGTAGGGCAGATAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGAT > 1:32219410/1‑68 GTAGGGCAGATAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCA > 1:4744801/1‑68 AGGGCAGATAAGGCGTTCGTTGCCAGTTGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAA > 1:22759797/1‑68 GGCAGATAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAAT > 1:171823/1‑67 AAGGCGTTCGTTGGCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:3923993/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGCACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:5533558/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCG > 1:2428510/1‑68 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCG > 1:11738725/1‑68 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:32788057/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:1019974/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:2407068/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:3583923/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:25331513/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:34990547/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:27802416/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:28154461/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:29995108/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:28317591/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:28430584/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:490753/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:30474448/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:4290051/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:3968024/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:13558536/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:1524262/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:8930452/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:16944914/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:20361091/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:19565103/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:17740698/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:13514131/67‑1 AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:8764685/67‑1 AAGGCGTGCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACC < 1:15776471/67‑1 AGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGT < 1:22351194/68‑1 AGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGT > 1:19846396/1‑68 AGGCGGTCGTTGCCAGATGCGGCGTGACCGCCTTATCTGCCCTACTATTTCGTGCAAATTCGAACCGT < 1:25576035/68‑1 GGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTA > 1:1967909/1‑68 GCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:32345223/1‑68 GCGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:18885051/1‑68 CGTTCGTTGCCAGATGCGGCGTGAGCGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:17884307/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTTTCTGCCCTACGATTTCGTGCAAATTCGAACCGTA < 1:24430259/66‑1 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGCCCCGTAG > 1:22462405/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAGCCGTAG > 1:23378350/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:34492714/68‑1 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG < 1:3850453/67‑1 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG < 1:32875464/67‑1 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:13864560/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:11022669/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:29953323/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:32004055/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:1547339/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:18584513/1‑67 CGTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAG > 1:4929590/1‑67 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGC < 1:18622615/68‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:8251399/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:5930456/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:3942613/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:39087/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:5251087/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:4990654/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:9546256/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:36146381/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:35797564/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:33885182/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:33507108/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:30772645/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:11164962/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:29204127/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:29106519/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:28437379/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:24235604/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:21249398/67‑1 GTTCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGG < 1:14803048/67‑1 TCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCA < 1:10504565/68‑1 TCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCA < 1:14221851/68‑1 TCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCA < 1:14939612/68‑1 TCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCA < 1:6675255/68‑1 TCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCA < 1:154494/68‑1 TCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCA < 1:18274503/68‑1 TCGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCA < 1:35832521/68‑1 CGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCAG > 1:15370389/1‑68 CGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCAG > 1:14917120/1‑68 CGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCAG > 1:29720344/1‑68 CGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCAG > 1:29764069/1‑68 GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3533051‑3533124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcgttcGTTGCCAGATGCGGCGTGAACGCCTTATCTGCCCTACGATTTCGTGCAAATTCGAACCGTAGGCCAG < CP009273/3533141‑3533075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |