| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3533124 | NA (NA) | 6 (0.020) | 5/94 | NT | NA | noncoding (20/34 nt) | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3533141 | NA (NA) | intergenic (+76/‑381) | yhgF/feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A | |||||
Only 100 of 538 total aligned reads displayed.
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT > CP009273/3533057‑3533190 | ccttAAACGCCCGTACAGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCAc > 1:5954106/3‑67 (MQ=255) cGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCAcg < 1:31030666/68‑1 (MQ=255) tAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCgttgc < 1:6739502‑M1/67‑6 (MQ=255) aaaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCAcgccgc < 1:22921127/68‑1 (MQ=255) aaaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCAcgccgc < 1:18583711/68‑1 (MQ=255) aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCa < 1:6583186/68‑1 (MQ=255) ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTgg < 1:15408233/68‑1 (MQ=255) tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCa > 1:5471782/1‑67 (MQ=255) aCTGGCCTCCGGTTCGAATTTGCCAGAAATCGTAGGGCAGCTAAGGCGTTCACGCCGCATCTGGCaac > 1:7827995/1‑68 (MQ=25) aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaac > 1:27328688/1‑68 (MQ=255) aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaac > 1:19508637/1‑68 (MQ=255) aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaac > 1:30632791/1‑68 (MQ=255) aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaac > 1:4720046/1‑68 (MQ=255) aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaac > 1:32094953/1‑68 (MQ=255) cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACg > 1:29720344‑M2/1‑67 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:11164962‑M2/67‑5 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:3942613‑M2/67‑5 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:35797564‑M2/67‑5 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:29204127‑M2/67‑5 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:14803048‑M2/67‑5 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:33507108‑M2/67‑5 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:8251399‑M2/67‑5 (MQ=255) ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaac < 1:33885182‑M2/67‑5 (MQ=255) cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgc > 1:32345223‑M2/1‑62 (MQ=255) cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacg > 1:29953323‑M2/1‑62 (MQ=255) cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacg > 1:4929590‑M2/1‑62 (MQ=255) cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacg < 1:32875464‑M2/67‑6 (MQ=255) tACGGTTCGAATTTGCACGAAATCGTAGGGCAGAAAAGGCGTTCACGCCGCATCTGGCAACgaacg < 1:24430259‑M2/66‑6 (MQ=255) aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgcct > 1:19846396‑M2/1‑60 (MQ=255) aCGGTTCGAATTTGCACGAAATAGTAGGGCAGATAAGGCGGTCACGCCGCATCTGGCAACgaccgcct < 1:25576035‑M2/68‑9 (MQ=255) ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgcctt < 1:3583923‑M2/67‑10 (MQ=255) ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgcctt < 1:16944914‑M2/67‑10 (MQ=255) ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgcctt < 1:32788057‑M2/67‑10 (MQ=255) ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgcctt < 1:8930452‑M2/67‑10 (MQ=255) tCGAATTTGCACGAAATCGCAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGACCGCCTTg > 1:4823736/1‑65 (MQ=255) gAATTTGCACGAAATCGTAGGGCAGATAAGTCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTg > 1:10313966/1‑67 (MQ=255) aTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgccttatctgcc > 1:171823‑M2/1‑51 (MQ=255) aTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGAc < 1:12433292/67‑1 (MQ=255) aTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGAc < 1:23898280/67‑1 (MQ=255) tttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACgaacgccttatctgccct > 1:30258301‑M2/1‑50 (MQ=255) tttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAt > 1:36365811/1‑68 (MQ=255) tttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAt > 1:3808757/1‑68 (MQ=255) tttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAt > 1:1546222/1‑68 (MQ=255) ttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATa < 1:20124714/68‑1 (MQ=255) aaTCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 1:24282812/68‑1 (MQ=255) aaTCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 1:33155738/68‑1 (MQ=255) cGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGga < 1:22070779/68‑1 (MQ=255) aGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga < 1:5632966/67‑1 (MQ=255) aGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga < 1:30168378/67‑1 (MQ=255) aGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga < 1:6481386/67‑1 (MQ=255) aGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa > 1:17478137/1‑68 (MQ=255) aGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 1:15992540/68‑1 (MQ=255) ggCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACGTAAAAGTGCCGGAGAata > 1:18737779/1‑68 (MQ=255) gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 1:28476828/1‑67 (MQ=255) gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 1:20483198/1‑67 (MQ=255) gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 1:26303969/1‑67 (MQ=255) gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 1:10996880/1‑67 (MQ=255) cAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat < 1:15070817/67‑1 (MQ=255) cAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat < 1:875369/67‑1 (MQ=255) cAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 1:36664587/1‑66 (MQ=255) tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 1:41532/1‑68 (MQ=255) tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 1:1464824/1‑68 (MQ=255) tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 1:23565487/1‑68 (MQ=255) aaGGCGTTCgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaacc < 1:28317591‑M1/67‑59 (MQ=255) aaGGCGTTCgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaacc < 1:28154461‑M1/67‑59 (MQ=255) aaGGCGTTCgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaacc < 1:25331513‑M1/67‑59 (MQ=255) aaGGCGTTCgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaacc < 1:34990547‑M1/67‑59 (MQ=255) aaGGCGTTCgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaacc < 1:13514131‑M1/67‑59 (MQ=255) aGGCGTTCgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgt < 1:22351194‑M1/68‑61 (MQ=255) aGGCGTTCACGCCGGATCTGGCAACGAACGCGTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc > 1:11809568/1‑68 (MQ=255) aGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc < 1:34016370/68‑1 (MQ=255) ggCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa > 1:75333/1‑68 (MQ=255) gCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAt > 1:20797355/1‑68 (MQ=255) cgttcgttgccagatgcggcgtgagcgccttatctgccctacgatttcgtgcaaattcgaaccgtag > 1:17884307‑M1/1‑5 (MQ=255) cgttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgagccgtag > 1:23378350‑M1/1‑5 (MQ=255) cgttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtagg < 1:34492714‑M1/68‑64 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGTCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:11730234/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa < 1:16420308/66‑1 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa < 1:21072771/66‑1 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:27772558/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:13006909/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:31782938/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:13781831/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:10014070/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:14143146/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:18427824/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:19106638/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:21766735/1‑68 (MQ=255) cGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:21439888/1‑68 (MQ=255) gttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtagg < 1:36146381‑M1/67‑64 (MQ=255) gttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtagg < 1:9546256‑M1/67‑64 (MQ=255) gttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtagg < 1:24235604‑M1/67‑64 (MQ=255) gttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtagg < 1:5251087‑M1/67‑64 (MQ=255) gttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtagg < 1:29106519‑M1/67‑64 (MQ=255) gttcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtagg < 1:39087‑M1/67‑64 (MQ=255) gTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttt < 1:32632283/68‑1 (MQ=255) gTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt < 1:22586873/67‑1 (MQ=255) gTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt < 1:979421/67‑1 (MQ=255) tcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtaggcca < 1:18274503‑M1/68‑67 (MQ=255) tcgttgccagatgcggcgtgaacgccttatctgccctacgatttcgtgcaaattcgaaccgtaggcca < 1:16853317‑M1/68‑67 (MQ=255) | AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT > CP009273/3533057‑3533190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |