New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3693271260 (0.580)18 (0.050) 8/94 NT 7.2% intergenic (+18/+69) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small
?CP009273 = 3693281 249 (0.670)intergenic (+28/+59) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small

Only 100 of 588 total aligned reads displayed.

AACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC  >  CP009273/3693204‑3693338
                                                                   |                                                                   
 aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:17585325/1‑68 (MQ=255)
 aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:18153985/1‑68 (MQ=255)
 aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:15948681/1‑68 (MQ=255)
 aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:26562763/1‑68 (MQ=255)
 aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:31050129/1‑68 (MQ=255)
 aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    <  1:15385861/68‑1 (MQ=255)
 aCCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCaga                                                                    >  1:12701477/1‑68 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:22074160/68‑1 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:20498523/68‑1 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   >  1:14843140/1‑68 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:21823224/68‑1 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:32168255/68‑1 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   <  1:27794184/68‑1 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   >  1:6476834/1‑68 (MQ=255)
  ccGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCagag                                                                   >  1:27974787/1‑68 (MQ=255)
   cGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAACAGGCCGCAGAGt                                                                  >  1:35935588/1‑68 (MQ=255)
   cGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGt                                                                  >  1:22999928/1‑68 (MQ=255)
      aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTc                                                               <  1:20764001/68‑1 (MQ=255)
      aCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTc                                                               <  1:2508938/68‑1 (MQ=255)
       cGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                              <  1:6374342/68‑1 (MQ=255)
        gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                              >  1:9116736/1‑67 (MQ=255)
        gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                              >  1:15171451/1‑67 (MQ=255)
        gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                              >  1:33648692/1‑67 (MQ=255)
        gTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTcc                                                              >  1:2001091/1‑67 (MQ=255)
         ttCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccc                                                             >  1:29019116/1‑67 (MQ=255)
         ttCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccc                                                             >  1:1781886/1‑67 (MQ=255)
          tCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTccccc                                                           <  1:31929512/68‑1 (MQ=255)
            gCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct                                                         >  1:11526883‑M2/1‑66 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:2116225‑M2/1‑62 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:12350841‑M2/1‑62 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:22394184‑M2/1‑62 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:21493856‑M2/1‑62 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:33015719‑M2/1‑62 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:31427023‑M2/1‑62 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:28722963‑M2/1‑62 (MQ=255)
                gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:26077154‑M2/1‑62 (MQ=255)
                 aaCGGCGGCGACTGGGGGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     >  1:36673918‑M2/1‑61 (MQ=255)
                  aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     <  1:18430506‑M2/66‑7 (MQ=255)
                  aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                     <  1:4385898‑M2/66‑7 (MQ=255)
                   cggcggCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcct                                                  >  1:2707466‑M2/1‑59 (MQ=255)
                    ggcggcGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTg                                                 >  1:26785168/1‑68 (MQ=255)
                      cggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg                                                <  1:16770995/67‑1 (MQ=255)
                      cggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg                                                <  1:34179284/67‑1 (MQ=255)
                       ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                               >  1:33154515/1‑67 (MQ=255)
                       ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                               >  1:27359416/1‑67 (MQ=255)
                         cgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCg                                            >  1:17232679/1‑68 (MQ=255)
                            cTGGGTTCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgtt                                          >  1:7543190‑M2/1‑50 (MQ=255)
                            cTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCggg                                          <  1:24098062/67‑1 (MQ=255)
                                  gCCTTACCCGCAGTAAGAACTAAAAATGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCaaa                                    <  1:34892582/67‑1 (MQ=255)
                                    cTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                  <  1:873982/67‑1 (MQ=255)
                                     ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgg                                >  1:29469153‑M2/1‑41 (MQ=255)
                                     ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTg                                 >  1:36287608/1‑67 (MQ=255)
                                     ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTg                                 >  1:16122382/1‑67 (MQ=255)
                                       aCCCGCAGTAAGAGCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              >  1:34576416/1‑68 (MQ=255)
                                       aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              >  1:5188788/1‑68 (MQ=255)
                                       aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              <  1:35120726/68‑1 (MQ=255)
                                       aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                              >  1:29920801/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGgggggaagctctgcggcctttttcgttcttactgcgggtaa                            >  1:22726165‑M1/1‑27 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:4877577/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:10071636/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:30561741/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:7107142/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:25249455/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:10955911/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:23361718/1‑68 (MQ=255)
                                         ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCACCTGCGGCCTGGTCCGGGAGCAAATTGCCAtt                            >  1:13677104/1‑68 (MQ=255)
                                          cGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:23838008/1‑67 (MQ=255)
                                          cGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                            >  1:36895873/1‑67 (MQ=255)
                                           gCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAc                          <  1:12176519/68‑1 (MQ=255)
                                             aGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACg                         >  1:1384444/1‑67 (MQ=255)
                                              gTAAGAACG‑AAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCa                      >  1:19760089/1‑68 (MQ=255)
                                                   aaCGAAAAAGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccag                   >  1:9298912‑M1/1‑17 (MQ=255)
                                                   aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                     >  1:4087289/1‑65 (MQ=255)
                                                     cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGa                <  1:11186460/68‑1 (MQ=255)
                                                      gAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGAc               <  1:32881258/68‑1 (MQ=255)
                                                         aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGCCGc             >  1:5669666/1‑67 (MQ=255)
                                                         aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc             >  1:10676183/1‑67 (MQ=255)
                                                           aGGCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccg          >  1:20272264‑M1/1‑9 (MQ=255)
                                                            ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc         >  1:820509/1‑68 (MQ=255)
                                                             gCCGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacacagtcgccgccgt         >  1:18361245‑M1/1‑7 (MQ=255)
                                                             gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa        >  1:7929561/1‑68 (MQ=255)
                                                             gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa        >  1:12944003/1‑68 (MQ=255)
                                                             gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa        >  1:2577836/1‑68 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:35732875‑M1/1‑6 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:18652038‑M1/1‑6 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:21340508‑M1/1‑6 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:24648410‑M1/1‑6 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttc       >  1:72777‑M1/1‑6 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgtt        >  1:35453112‑M1/1‑6 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt         <  1:10487281‑M1/66‑61 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgt         <  1:1186397‑M1/66‑61 (MQ=255)
                                                              ccGCAGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccg          <  1:288364‑M1/65‑60 (MQ=255)
                                                              ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc         <  1:5889543/66‑1 (MQ=255)
                                                              ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa        <  1:609701/67‑1 (MQ=255)
                                                              ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa        <  1:19271127/67‑1 (MQ=255)
                                                              ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt       >  1:31774032/1‑68 (MQ=255)
                                                              ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt       >  1:14195556/1‑68 (MQ=255)
                                                                  agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac    <  1:2621833/67‑1 (MQ=255)
                                                                  aGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcaggc   >  1:21209466‑M1/1‑2 (MQ=255)
                                                                  aGgggggaaactctgcggcctttttcgttcttactgcgggtaaggcacccagtcgccgccgttcagg    <  1:2849343‑M1/67‑66 (MQ=255)
                                                                   |                                                                   
AACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACAC  >  CP009273/3693204‑3693338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.