New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3693271260 (0.580)18 (0.050) 8/94 NT 7.2% intergenic (+18/+69) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small
?CP009273 = 3693281 249 (0.670)intergenic (+28/+59) bcsG/ldrD DUF3260 family inner membrane protein associated with cellulose production/toxic polypeptide, small

Only 100 of 425 total aligned reads displayed.

TCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCG  >  CP009273/3693214‑3693348
                                                                   |                                                                   
   ccTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCct                                                                   <  1:36845728‑M2/67‑3 (MQ=255)
      gAACGGCGGCTACTGGGTGCCTTACCCGCACTAAGAACGAAAATGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:32810750‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAATAACGAAAAAGGCCGCATAGTTTCCCCCctgcgg                                                               >  1:31834031‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:24648410‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:10801553‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:25401599‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:35732875‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:23880934‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:26077154‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:12221657‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:5717405‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:13758264‑M2/1‑62 (MQ=255)
      gAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               >  1:31427023‑M2/1‑62 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:21207077‑M2/66‑7 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:12527147‑M2/66‑7 (MQ=255)
        aCGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:14841426‑M2/66‑7 (MQ=255)
         cggcggCGACTGGGTGCCTTACCCGCAGTAATAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcct                                                            >  1:22477312‑M2/1‑59 (MQ=255)
         cggcggCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcgg                                                               <  1:288364‑M2/65‑7 (MQ=255)
          ggcggcGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTg                                                           >  1:11113777/1‑68 (MQ=255)
            cggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTgg                                                          <  1:6591358/67‑1 (MQ=255)
             ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                                         >  1:181433/1‑67 (MQ=255)
             ggcgACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                                         >  1:33154515/1‑67 (MQ=255)
                  cTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggcctttttcgtt                                                    >  1:29044538‑M2/1‑50 (MQ=255)
                     ggTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCa                                                >  1:7598977/1‑68 (MQ=255)
                      gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCa                                                <  1:34343898/67‑1 (MQ=255)
                      gTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCa                                                <  1:27885127/67‑1 (MQ=255)
                       tGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGt                                                         >  1:1836200/1‑57 (MQ=255)
                        gCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAt                                             >  1:17336772/1‑68 (MQ=255)
                          cTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAAtt                                            <  1:873982/67‑1 (MQ=255)
                           ttACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTg                                           >  1:16122382/1‑67 (MQ=255)
                            tACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGcc                                         <  1:23775919/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCctgcggc                                                              >  1:17758065‑M2/1‑39 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        >  1:29920801/1‑68 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        <  1:35078018/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        >  1:25781110/1‑68 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        <  1:7363618/68‑1 (MQ=255)
                             aCCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCa                                        >  1:11693125/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:25184159/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:27401531/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:10071636/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:23361718/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:7107142/1‑68 (MQ=255)
                               ccGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:34511154/1‑68 (MQ=255)
                                cGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCAtt                                      >  1:6301792/1‑67 (MQ=255)
                                 gCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTAc                                    <  1:26491076/68‑1 (MQ=255)
                                   aGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCTCAAATTGCCATTACg                                   >  1:2665793/1‑67 (MQ=255)
                                   aGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACg                                   >  1:3475511/1‑67 (MQ=255)
                                      aaGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               <  1:20641953/68‑1 (MQ=255)
                                      aaGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               <  1:5938584/68‑1 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGTACCGGCCGCAAATTGCCATTACGGCAg                               >  1:4622179/1‑65 (MQ=37)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:36409465/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:15956386/1‑65 (MQ=255)
                                         aaCGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAg                               >  1:4087289/1‑65 (MQ=255)
                                          aCGAAAAAGGCCGCAGAGGTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGcc                             <  1:2199496/66‑1 (MQ=255)
                                           cGAAAAGGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg                           >  1:20336397/1‑67 (MQ=255)
                                           cGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTg                           >  1:28699329/1‑67 (MQ=255)
                                              accaggcCGCAGAGTTTCCCCCctgcggcctttttcgttcttactgcgggtaaggcacccagtcgcc                        <  1:18615213‑M2/64‑46 (MQ=255)
                                              accaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACg                        >  1:19901811/4‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:3295121/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:10583190/1‑67 (MQ=255)
                                               aaaGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:29516534/1‑67 (MQ=255)
                                                 aGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCg                    <  1:132735/68‑1 (MQ=255)
                                                 aGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCg                    <  1:32038271/68‑1 (MQ=255)
                                                 aGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCg                    <  1:8454169/68‑1 (MQ=255)
                                                  ggCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGc                   >  1:611208/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCCGCCTGCCGCCCGCa                  >  1:35875686/1‑68 (MQ=255)
                                                   gCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCa                  >  1:30878357/1‑68 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt                 >  1:17194129/1‑68 (MQ=255)
                                                    ccGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCAt                 >  1:2158394/1‑68 (MQ=255)
                                                      gCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATg                >  1:4983167/1‑67 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:2621833/67‑1 (MQ=255)
                                                        agagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGac              <  1:5490935/67‑1 (MQ=255)
                                                         gagTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGacac            >  1:9293567/1‑68 (MQ=255)
                                                          agTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           >  1:7910540/1‑68 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGc                       >  1:27129950/1‑55 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:15058166/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:15279336/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:1910603/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:12802854/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:11926407/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:37153864/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:19540160/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACg           <  1:30169338/67‑1 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGt          >  1:8873231/1‑68 (MQ=255)
                                                           gTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGt          >  1:11301007/1‑68 (MQ=255)
                                                             ttCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGtt         <  1:16649273/67‑1 (MQ=255)
                                                             ttCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGtt         >  1:35377761/1‑67 (MQ=255)
                                                              tCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTAc       <  1:22685707/68‑1 (MQ=255)
                                                              tCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTAc       <  1:33876733/68‑1 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:36253916/1‑67 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:8058217/1‑67 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:13960974/1‑67 (MQ=255)
                                                                cccccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACt      >  1:35551738/1‑67 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:21866105/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:11516811/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:22903553/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:21414640/1‑68 (MQ=255)
                                                                  cccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTcc   >  1:2011366/1‑68 (MQ=255)
                                                                   ccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg  <  1:28261236/68‑1 (MQ=255)
                                                                   ccTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCg  <  1:21087335/68‑1 (MQ=255)
                                                                   |                                                                   
TCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGAGTTTCCCCCCTGCGGCCTGGTCCGGGCGCAAATTGCCATTACGGCAGCCTGACGCCCGCATGACACGTTACTTCCG  >  CP009273/3693214‑3693348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.