New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4306574 =181 (0.410)14 (0.040) 9/98 NT 8.8% coding (462/1137 nt) phnM ribophosphonate triphosphate hydrolase
?CP009273 4306632 = 132 (0.340)coding (404/1137 nt) phnM ribophosphonate triphosphate hydrolase

Only 100 of 319 total aligned reads displayed.

CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641
                                                                  |                                                                   
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:1528962/68‑1 (MQ=255)
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:30292103/68‑1 (MQ=255)
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:11590445/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg                                                                   <  1:10124027/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:36000285/1‑67 (MQ=255)
 atgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    <  1:25967029‑M1/2‑1 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc                                                                  >  1:2203479‑M1/65‑68 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:26664805‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:8582292‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:35014714‑M1/65‑66 (MQ=255)
   gcgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:27416084/1‑65 (MQ=255)
   gaagaagagcaactggcgctCGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:8468669‑M2/21‑65 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGCCACCAGCGTCACCGGCTCGCGCt                                                                 >  1:16336661/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:22829455/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:36947040/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:5487987/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:25785357/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:10954819/1‑67 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:33305248/68‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:26779243/1‑68 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:35802590/1‑68 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:2932226/1‑68 (MQ=255)
      gaagagcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCCGCGTCCCCGGCTCGCGCTGc                                                               >  1:14673413‑M2/18‑67 (MQ=255)
      gaagagcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:11894934‑M2/18‑67 (MQ=255)
      gTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:21927927/1‑67 (MQ=255)
      gTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:32862049/1‑67 (MQ=255)
      gTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACAAGCGTCACCGGCTCGCGCTGc                                                               >  1:22523717/1‑67 (MQ=255)
         ggCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCa                                                           <  1:1127637/68‑1 (MQ=255)
           cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:36804084/1‑68 (MQ=255)
           cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:14900449/1‑68 (MQ=255)
            gAACTGTCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCTGCTCGCGCTGCACCAGt                                                         <  1:20495737/67‑1 (MQ=255)
            gAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGtt                                                        <  1:23564889/68‑1 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:9076951‑M2/11‑68 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:21129430‑M2/11‑68 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:23933732‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:13953596‑M2/58‑1 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCaaa                                                 <  1:201391‑M2/64‑1 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:34904366‑M2/4‑68 (MQ=255)
                      tGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACa                                               <  1:611253‑M2/66‑1 (MQ=255)
                        gCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:19416296/1‑68 (MQ=255)
                        gCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:31063426/1‑68 (MQ=255)
                         cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCCCCAGTTTTTCAAACAGCg                                            >  1:2819346/1‑67 (MQ=255)
                         cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:28471273/1‑67 (MQ=255)
                         cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:20800365/1‑67 (MQ=255)
                          ccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGc                                          <  1:34104475/68‑1 (MQ=255)
                          ccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGc                                          <  1:27018572/68‑1 (MQ=255)
                             aacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGc                                          >  1:4815228‑M1/38‑65 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:29898744/1‑68 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:21074996/1‑68 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:12681755/1‑68 (MQ=255)
                               cgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgt                                     >  1:16617011‑M1/36‑68 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtggtg                                 >  1:27545781/1‑68 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtggtg                                 >  1:30556306/1‑68 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtgg                                   <  1:16245853/66‑1 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtgg                                   <  1:8051209/66‑1 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtgg                                   <  1:2432056/66‑1 (MQ=255)
                                      ccATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGa                              >  1:24698388/1‑68 (MQ=255)
                                      ccATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGa                              >  1:2881022/1‑68 (MQ=255)
                                        aTCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGAt                             >  1:15112219/1‑67 (MQ=255)
                                         tCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGc                           >  1:32135780/1‑68 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACATCGCCAGAGTGGAGTGATGCg                          >  1:9781642/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:17687545/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:1073111/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:12124933/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:8562257/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:12908397/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:5259454/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:4250890/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:15681027/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:16798197/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:36459654/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:28006236/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:18446258/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:19806093/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:31890491/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:33026000/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGATTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:12344685/1‑67 (MQ=255)
                                           aGCGACACCAGCCTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCCTCGTGTGATGCg                          >  1:13584748/1‑67 (MQ=255)
                                            gCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGc                        <  1:33459682‑M2/68‑2 (MQ=255)
                                             cGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGca                       <  1:7417990‑M2/68‑3 (MQ=255)
                                              gACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGGTGCGGcag                      <  1:34055925‑M2/68‑4 (MQ=255)
                                               acacCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGcagt                     <  1:31450556‑M2/68‑5 (MQ=255)
                                                   cAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGcagttcgc                 <  1:32392567‑M2/68‑9 (MQ=255)
                                                   cAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGcagttcgc                 <  1:21684216‑M2/68‑9 (MQ=255)
                                                   cAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGcagttcgc                 <  1:7048049‑M2/68‑9 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:25633981/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:10867120/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:34308910/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:21297473/1‑68 (MQ=255)
                                                         cACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgca           <  1:35437018/68‑1 (MQ=255)
                                                          ctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgcag          <  1:24157394‑M1/60‑1 (MQ=255)
                                                           tgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:3181601‑M1/8‑68 (MQ=255)
                                                           tgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:8994322‑M1/8‑68 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         <  1:13124497/68‑1 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         <  1:1821456/68‑1 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         <  1:8188081/68‑1 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:19112218/1‑68 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         <  1:20610283/68‑1 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:17453212/1‑68 (MQ=255)
                                                               cTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     >  1:13458417/1‑68 (MQ=255)
                                                                  |                                                                   
CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.