| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4506708 = | 369 (0.830) | 24 (0.060) | 11/94 | NT | 7.9% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 250 (0.670) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
Only 100 of 488 total aligned reads displayed.
TGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA > CP009273/4506642‑4506774 | tGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGc < 1:23325524/68‑1 (MQ=255)cgaaggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGc < 1:16059786‑M1/2‑1 (MQ=255)cgaaggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGc < 1:11485196‑M1/2‑1 (MQ=255) gaaggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCa < 1:26309947‑M1/3‑1 (MQ=255) cgcgATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCa > 1:6752006/1‑67 (MQ=255) aaggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgtttccgcc < 1:28986498‑M1/3‑2 (MQ=255) aggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCAAc > 1:20945967‑M1/64‑68 (MQ=255) aggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCAAc > 1:21998503‑M1/64‑68 (MQ=255) ggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCAAcg < 1:35589073‑M1/6‑1 (MQ=255) ggacatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCAAcg < 1:5082663‑M1/6‑1 (MQ=255) gATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAAcg < 1:30322475/67‑1 (MQ=255) acatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCAAcgg > 1:4624605‑M1/61‑67 (MQ=255) acatcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCAAcgg > 1:11808594‑M1/61‑67 (MQ=255) catcctgagcttcagcgataaaccgctgggtgaggtgatagccacgctaacccgttaccGCAAcggc > 1:24512105‑M1/60‑67 (MQ=255) aCGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCACcggcgg > 1:26636555/1‑67 (MQ=255) aCGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCggg < 1:21556854/68‑1 (MQ=255) gTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGa > 1:2883515/1‑67 (MQ=255) gTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGa > 1:33637857/1‑67 (MQ=255) tCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑c > 1:8451163/1‑67 (MQ=255) tCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑c > 1:31228708/1‑67 (MQ=255) tCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑c < 1:18680230/67‑1 (MQ=255) tCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑c < 1:588828/67‑1 (MQ=255) ggATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgca > 1:8851908/1‑67 (MQ=255) gATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:17489635/1‑68 (MQ=255) gATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:35754024/1‑68 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:22805199/1‑67 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:36383888/1‑67 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc < 1:25112642/67‑1 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:28163223/1‑67 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:1024790/1‑67 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:19770197/1‑67 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagc > 1:13297306/1‑67 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgca < 1:3989025/65‑1 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgca < 1:23821246/65‑1 (MQ=255) aTCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgca < 1:17904441/65‑1 (MQ=255) cGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagcgca < 1:32085879/68‑1 (MQ=255) gCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagcgcag < 1:16758117/68‑1 (MQ=255) gCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑cgcagcgca > 1:34143978/1‑67 (MQ=255) aTCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑Cgcagcgcagc < 1:13131890/67‑1 (MQ=255) aTCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑Cgcagcgcagc > 1:10001072/1‑67 (MQ=255) aTCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑Cgcagcgcagc < 1:19007175/67‑1 (MQ=255) cGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACg < 1:29757456/68‑1 (MQ=255) cGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACg < 1:18403999/68‑1 (MQ=255) tATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGcc < 1:29847215/67‑1 (MQ=255) tATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGcc < 1:1544934/67‑1 (MQ=255) aTTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGt > 1:3399390/1‑68 (MQ=255) aTTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGt > 1:36704816/1‑68 (MQ=255) aTTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGt > 1:24084811/1‑68 (MQ=255) tttCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGc > 1:6462833/1‑68 (MQ=255) tCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCgg < 1:5534329/68‑1 (MQ=255) tCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCgg > 1:15714144/1‑68 (MQ=255) tCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCgg > 1:4280450/1‑68 (MQ=255) tCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCgg > 1:17181816/1‑68 (MQ=255) cAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGt < 1:2723236/68‑1 (MQ=255) gAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACgg < 1:30010902/67‑1 (MQ=255) gAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACgg < 1:35072078/67‑1 (MQ=255) gAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACgg < 1:20260073/67‑1 (MQ=255) gAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACgg < 1:29212164/67‑1 (MQ=255) gAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACgg < 1:738092/67‑1 (MQ=255) aaCGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACggg < 1:30644858/67‑1 (MQ=255) aaCGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACggg < 1:34634929/67‑1 (MQ=255) aaCGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACggg < 1:21194395/67‑1 (MQ=255) gTCCCGCTCAGGCGCAGCCGGGCAACGGCGGGAG‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAg < 1:11038947/68‑1 (MQ=255) cccGCTCAGGCGCAGCCCGGCAACGGCGTGCTGCGCTGCG‑ATCCCGCGGTTGCGGTAACGGGTTAGCg > 1:31602481/1‑68 (MQ=9) cccGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGc < 1:13542638/67‑1 (MQ=255) cccGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGc < 1:7884264/67‑1 (MQ=255) cccGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCg > 1:14060829/1‑68 (MQ=255) ccacgctaacccgttaccGCAGCGGCGGGAT‑CGCCGCGCAGCGCGCCGTTGCGGTCACGGGTTCGCGt < 1:12176436‑M1/50‑1 (MQ=255) ccacgctaacccgttaccGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGGTGCGGTAACGGGTTAGCGt < 1:27568907‑M1/50‑1 (MQ=255) ccGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGt < 1:32901688/68‑1 (MQ=255) gCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTgg < 1:14787319/68‑1 (MQ=255) gCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTgg < 1:10619720/68‑1 (MQ=255) cTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTg > 1:25605843/1‑66 (MQ=255) tCAGGCGCAGCGCTGCAACGGCGTGAT‑CGCAGCGCAGATCGCCGTTGCGGTTAGTGGTTAGCGTGGc < 1:22385877/67‑1 (MQ=255) tCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGc < 1:9584879/67‑1 (MQ=255) tCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGc < 1:9344164/67‑1 (MQ=255) tCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGc < 1:7103550/67‑1 (MQ=255) tCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGc < 1:22202204/67‑1 (MQ=255) tCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGc < 1:22993481/67‑1 (MQ=255) tCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGc < 1:26809195/67‑1 (MQ=255) cAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTa < 1:33031872/68‑1 (MQ=255) ggCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtc > 1:26053858/1‑68 (MQ=255) cgcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtca < 1:12821364/67‑1 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcac < 1:10877706/67‑1 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcac < 1:12563166/67‑1 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcac < 1:19433104/67‑1 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcac < 1:6823852/67‑1 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcac < 1:26864213/67‑1 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtca > 1:32359104/1‑66 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtca > 1:3730467/1‑66 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtca > 1:16267669/1‑66 (MQ=255) gcAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtca > 1:14480305/1‑66 (MQ=255) ccgttaccGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGGTGCGGTAACGGGTTAGCGTGGCTAtca < 1:34320913‑M1/58‑1 (MQ=255) cgttaccGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcacc < 1:6219679‑M1/60‑1 (MQ=255) cccGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcacctca > 1:26470674/1‑67 (MQ=255) ccGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcacctctc > 1:11143129/1‑65 (MQ=255) ccGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTGGCGGTAACGGGTTAGCGTGGCTAtcacctcac > 1:20101095/1‑67 (MQ=255) ccGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTAtcacctcacc < 1:32497010‑M1/65‑1 (MQ=255) cGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCa < 1:35979001‑M1/67‑1 (MQ=255) GCAACGGCGGGAT‑CGCAGCGCTGCACGCCGTTGCGGTTACGGGTTAGCGTGGCTATCACCTCACCCa < 1:33342308‑M1/67‑1 (MQ=255) | TGCGCGATAACGTTCAGGATCGCATCGGTATTTTTCAGCGGGAACGTCCCGCTCAGGCGCAGCCCGGCAACGGCGGGAT‑CGCAGCGCAGCACGCCGTTGCGGTAACGGGTTAGCGTGGCTATCACCTCACCCA > CP009273/4506642‑4506774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |