| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 386 (0.870) | 232 (0.700) +CTGATCAGTGAATT |
17/84 | NT | 44.7% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 380 (0.850) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 722 total aligned reads displayed.
CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG > CP009273/360003‑360137 | ccAGAGGGACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:7288745/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:103533/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat > 1:9881916/1‑68 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:7906226/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:36516777/68‑1 (MQ=255) agagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgatga > 1:3435987/1‑68 (MQ=255) agGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATa > 1:5092501/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCCGGAGCTCCGATGATaa > 1:27572875/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:20210153/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:6170558/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:24329426/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:3409428/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:32419278/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:15671218/1‑68 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:29631623/1‑68 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCCCCATCCAGTGCAGGAGCTCCGATGATaa > 1:3094405/1‑67 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:31621761/1‑67 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:26737619/1‑67 (MQ=255) cACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:30228455/1‑66 (MQ=255) cACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:24572591/1‑66 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCt < 1:398313/68‑1 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCt < 1:23986970/68‑1 (MQ=255) ttCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGt < 1:28439458/68‑1 (MQ=255) ttCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGt < 1:35080890/68‑1 (MQ=255) ttCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGt < 1:20706912/68‑1 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:1878724‑M1/55‑68 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:21332021‑M1/14‑1 (MQ=255) aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCaa > 1:10011632/1‑68 (MQ=255) aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCaa > 1:9031419/1‑68 (MQ=255) cctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:13926881‑M1/14‑1 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:9262735‑M1/52‑68 (MQ=255) gCTTGCCAGCTGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACa < 1:28112757/68‑1 (MQ=255) ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATg < 1:3123780/68‑1 (MQ=255) ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGATCCGATGATAAGCTGTCAAACATg < 1:19275873/68‑1 (MQ=255) cccggatattattgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:35901881‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:11876457‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:16954377‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:30389418‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:18501683‑M1/50‑68 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:17379999‑M1/20‑1 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:14575901‑M1/20‑1 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:5847733‑M1/20‑1 (MQ=255) cggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATgag > 1:35438557‑M1/48‑68 (MQ=255) cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATgaga < 1:18945603/67‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:15357063‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:35625301‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:8251499‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:15927638‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:32111757‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:1816466‑M1/24‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:13560396‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:6940165‑M1/25‑1 (MQ=255) ttatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTcc > 1:36935828‑M1/42‑68 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCTGGAGCTCCGATGATAAGCTGTCAAACATGAGAAGTCC > 1:28021290‑M1/1‑68 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAAtt < 1:22721480/66‑1 (MQ=255) gCTTACCATCCAGCGCCACCATCCAGTGCTGGAGCTCCGCTGATAAGCTGTCAAACATGAGAATTCCg > 1:11073751/1‑68 (MQ=255) gCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGATTTCCg > 1:14865545/1‑68 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat > 1:27686108‑M1/40‑66 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:8795066‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:12017008‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:2509276‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaatccactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:5428159‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:4175737‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:11645263‑M1/29‑3 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATTATAAGCTGTCAAACATGAGAATTCCGATcc < 1:34611443/68‑1 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:12554982/68‑1 (MQ=255) ccATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATccc < 1:29895811/68‑1 (MQ=255) ccATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc > 1:2118385/1‑67 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:21623681/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:32649053/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:7633925/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:31460432/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:646097/1‑68 (MQ=255) atgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:23377132‑M1/31‑44 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 1:16703870/1‑66 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:2193687/1‑68 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:17729047/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:28783783/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:10703171/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:29304898/68‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:33474312/1‑68 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:16186616/1‑68 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:33185658/1‑68 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:32877569/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:22333898/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:26172875/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:25358578/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:29016530/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:2309186/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:33848598/1‑68 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:6684781/1‑68 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:19506908/1‑68 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:27137903/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:9512433/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:14313500/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:23599486/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg < 1:26523901/65‑1 (MQ=255) gcgccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 1:8471828/64‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 1:4781274/1‑65 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:13211704‑M1/4‑30 (MQ=255) | CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG > CP009273/360003‑360137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |